Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24396 | 3' | -55.6 | NC_005264.1 | + | 162395 | 0.67 | 0.902157 |
Target: 5'- --cGACCGCGCauagGUACGA-GAcGCUAg -3' miRNA: 3'- ugaCUGGCGCGa---CAUGCUgCUuCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 147785 | 0.67 | 0.902157 |
Target: 5'- --gGACCGCGCgaacUGcGCGACGGAGgUg -3' miRNA: 3'- ugaCUGGCGCG----ACaUGCUGCUUCgGu -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 93907 | 0.67 | 0.895714 |
Target: 5'- -aUGAUacaGCGC-GUACG-CGAAGCCu -3' miRNA: 3'- ugACUGg--CGCGaCAUGCuGCUUCGGu -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 159303 | 0.67 | 0.889042 |
Target: 5'- uGCUGgacgccGCCGCGUcgcgGUuCGACGAGGCgGa -3' miRNA: 3'- -UGAC------UGGCGCGa---CAuGCUGCUUCGgU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 40276 | 0.67 | 0.889042 |
Target: 5'- uGCUGgacgccGCCGCGUcgcgGUuCGACGAGGCgGa -3' miRNA: 3'- -UGAC------UGGCGCGa---CAuGCUGCUUCGgU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 64512 | 0.67 | 0.889042 |
Target: 5'- --gGACCGCGCUGUucuguCcGCGccGCCGc -3' miRNA: 3'- ugaCUGGCGCGACAu----GcUGCuuCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 86739 | 0.67 | 0.889042 |
Target: 5'- uCUGauGCCGCGCUGUucGCGccCGuaGAGCCGu -3' miRNA: 3'- uGAC--UGGCGCGACA--UGCu-GC--UUCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 82172 | 0.67 | 0.882143 |
Target: 5'- aACUG-CCGUGCggccgGU-CGGCGGcGGCCAu -3' miRNA: 3'- -UGACuGGCGCGa----CAuGCUGCU-UCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 149243 | 0.67 | 0.882143 |
Target: 5'- cGCUGGCCggugugGCGCUGgg-GcCGAAGCCc -3' miRNA: 3'- -UGACUGG------CGCGACaugCuGCUUCGGu -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 23232 | 0.67 | 0.882143 |
Target: 5'- uCUGGCCaCGUUGgagccguagACGACGGAGCa- -3' miRNA: 3'- uGACUGGcGCGACa--------UGCUGCUUCGgu -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 33404 | 0.67 | 0.875022 |
Target: 5'- --cGACCGCGgugaUGUugGGCGAGuacGCCc -3' miRNA: 3'- ugaCUGGCGCg---ACAugCUGCUU---CGGu -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 77748 | 0.67 | 0.867683 |
Target: 5'- aGCUGACUacgGCGCcGUauccgaaucugACGACGcGGCCGc -3' miRNA: 3'- -UGACUGG---CGCGaCA-----------UGCUGCuUCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 116441 | 0.68 | 0.860134 |
Target: 5'- uCUGGCCGCGggGgcgACGAuCGggGCg- -3' miRNA: 3'- uGACUGGCGCgaCa--UGCU-GCuuCGgu -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 153358 | 0.68 | 0.852378 |
Target: 5'- gGCUGACU-CGCUG-ACG-CGAGGUCGg -3' miRNA: 3'- -UGACUGGcGCGACaUGCuGCUUCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 34331 | 0.68 | 0.852378 |
Target: 5'- gGCUGACU-CGCUG-ACG-CGAGGUCGg -3' miRNA: 3'- -UGACUGGcGCGACaUGCuGCUUCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 123116 | 0.68 | 0.836275 |
Target: 5'- cACgGGCgGCGUcgcgGcACGACGggGCCGa -3' miRNA: 3'- -UGaCUGgCGCGa---CaUGCUGCuuCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 87119 | 0.68 | 0.836275 |
Target: 5'- aACUGcCaCGCGCUGUACGcCGAGaucGUCGc -3' miRNA: 3'- -UGACuG-GCGCGACAUGCuGCUU---CGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 4089 | 0.68 | 0.836275 |
Target: 5'- cACgGGCgGCGUcgcgGcACGACGggGCCGa -3' miRNA: 3'- -UGaCUGgCGCGa---CaUGCUGCuuCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 142768 | 0.68 | 0.836275 |
Target: 5'- aGCUGACgGUGCUugcucgcUACG-CGggGCCGc -3' miRNA: 3'- -UGACUGgCGCGAc------AUGCuGCuuCGGU- -5' |
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24396 | 3' | -55.6 | NC_005264.1 | + | 162210 | 0.68 | 0.827941 |
Target: 5'- uCU-AUCGCGCUGccUGCGACGcGGGCCGg -3' miRNA: 3'- uGAcUGGCGCGAC--AUGCUGC-UUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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