Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24396 | 5' | -59.4 | NC_005264.1 | + | 95381 | 0.68 | 0.646983 |
|
Target: 5'- --cGGGUUUcaCGAGCUgGCCGCgCUGGu -3' miRNA: 3'- aaaCCCAAGa-GCUCGGgCGGUG-GGCC- -5' |
|||||||
| 24396 | 5' | -59.4 | NC_005264.1 | + | 64673 | 0.69 | 0.637022 |
|
Target: 5'- --aGGGggUUUGGGCCUGCCGgCgGGc -3' miRNA: 3'- aaaCCCaaGAGCUCGGGCGGUgGgCC- -5' |
|||||||
| 24396 | 5' | -59.4 | NC_005264.1 | + | 528 | 0.69 | 0.637022 |
|
Target: 5'- -aUGGGgccgC-CGAGCaCCcaGCCAUCCGGa -3' miRNA: 3'- aaACCCaa--GaGCUCG-GG--CGGUGGGCC- -5' |
|||||||
| 24396 | 5' | -59.4 | NC_005264.1 | + | 58257 | 0.69 | 0.627058 |
|
Target: 5'- aUUuGGUUacgcUUCGAGCCCGCUGCCUuGGa -3' miRNA: 3'- aAAcCCAA----GAGCUCGGGCGGUGGG-CC- -5' |
|||||||
| 24396 | 5' | -59.4 | NC_005264.1 | + | 60590 | 0.72 | 0.463328 |
|
Target: 5'- --cGGcGUUCUCGAGCCCcuucucguauGCCGCggcagCCGGc -3' miRNA: 3'- aaaCC-CAAGAGCUCGGG----------CGGUG-----GGCC- -5' |
|||||||
| 24396 | 5' | -59.4 | NC_005264.1 | + | 158395 | 0.72 | 0.463328 |
|
Target: 5'- -aUGGGagC-CGuauauGCCCGCCGCCCGu -3' miRNA: 3'- aaACCCaaGaGCu----CGGGCGGUGGGCc -5' |
|||||||
| 24396 | 5' | -59.4 | NC_005264.1 | + | 34995 | 0.72 | 0.419311 |
|
Target: 5'- --cGGGUUCUaGAccGCCgGCCGCCgCGGa -3' miRNA: 3'- aaaCCCAAGAgCU--CGGgCGGUGG-GCC- -5' |
|||||||
| 24396 | 5' | -59.4 | NC_005264.1 | + | 115870 | 1.08 | 0.001695 |
|
Target: 5'- gUUUGGGUUCUCGAGCCCGCCACCCGGg -3' miRNA: 3'- -AAACCCAAGAGCUCGGGCGGUGGGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home