Results 1 - 20 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24397 | 3' | -52.8 | NC_005264.1 | + | 53222 | 0.66 | 0.981453 |
Target: 5'- gUgGACGcguaucucCGCGAAAGCGGcGGACCGg -3' miRNA: 3'- aAgCUGCc-------GCGUUUUCGCC-UUUGGCg -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 45411 | 0.66 | 0.981453 |
Target: 5'- --gGGCGGCGCccu-GCGc--GCCGCg -3' miRNA: 3'- aagCUGCCGCGuuuuCGCcuuUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 108597 | 0.66 | 0.981453 |
Target: 5'- cUCGACacguuGGCGC----GCGG-GGCCGCc -3' miRNA: 3'- aAGCUG-----CCGCGuuuuCGCCuUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 156093 | 0.66 | 0.981453 |
Target: 5'- aUCGAUGaacacuucccGCGCcacgccGCGGAGuACCGCg -3' miRNA: 3'- aAGCUGC----------CGCGuuuu--CGCCUU-UGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 64531 | 0.66 | 0.981453 |
Target: 5'- -gCGcCGcCGCGGAGGgGGGuuCCGCg -3' miRNA: 3'- aaGCuGCcGCGUUUUCgCCUuuGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 150536 | 0.66 | 0.981453 |
Target: 5'- gUCaGGCGGCuccagGCucGGGCGGGgagGGCCGUu -3' miRNA: 3'- aAG-CUGCCG-----CGuuUUCGCCU---UUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 152745 | 0.66 | 0.981453 |
Target: 5'- -aCGgacACGGcCGCGAugcccccGGCGGGAgauuccGCCGCg -3' miRNA: 3'- aaGC---UGCC-GCGUUu------UCGCCUU------UGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 93837 | 0.66 | 0.981453 |
Target: 5'- -aCGAUGGCGaCAGGGccGCGGGccacuGGcCCGCu -3' miRNA: 3'- aaGCUGCCGC-GUUUU--CGCCU-----UU-GGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 125144 | 0.66 | 0.981453 |
Target: 5'- -aUGACGuccaucagguGCGgGAGGGCGaGGGCCGCg -3' miRNA: 3'- aaGCUGC----------CGCgUUUUCGCcUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 91901 | 0.66 | 0.981453 |
Target: 5'- -cCG-CGGCaGCGAuGGGCGGgcGCgGCg -3' miRNA: 3'- aaGCuGCCG-CGUU-UUCGCCuuUGgCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 23751 | 0.66 | 0.981453 |
Target: 5'- gUCG-CGGUGCAGAccuuagaccaAGUuugGGGAACgGCg -3' miRNA: 3'- aAGCuGCCGCGUUU----------UCG---CCUUUGgCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 6117 | 0.66 | 0.981453 |
Target: 5'- -aUGACGuccaucagguGCGgGAGGGCGaGGGCCGCg -3' miRNA: 3'- aaGCUGC----------CGCgUUUUCGCcUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 31509 | 0.66 | 0.981453 |
Target: 5'- gUCaGGCGGCuccagGCucGGGCGGGgagGGCCGUu -3' miRNA: 3'- aAG-CUGCCG-----CGuuUUCGCCU---UUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 98678 | 0.66 | 0.980814 |
Target: 5'- -cUGGCGGCGCuugcacaccggccgGAucGCGGc-GCCGUg -3' miRNA: 3'- aaGCUGCCGCG--------------UUuuCGCCuuUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 38364 | 0.66 | 0.980597 |
Target: 5'- --gGGCGGUuaggaccuccuccgGCGAGAGCGGcGAcgccgagacagauGCCGCg -3' miRNA: 3'- aagCUGCCG--------------CGUUUUCGCC-UU-------------UGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 78186 | 0.66 | 0.980597 |
Target: 5'- -aCGACGGcCGCAcaauacgcuaCGGAcACCGCc -3' miRNA: 3'- aaGCUGCC-GCGUuuuc------GCCUuUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 157391 | 0.66 | 0.980597 |
Target: 5'- --gGGCGGUuaggaccuccuccgGCGAGAGCGGcGAcgccgagacagauGCCGCg -3' miRNA: 3'- aagCUGCCG--------------CGUUUUCGCC-UU-------------UGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 77124 | 0.66 | 0.980159 |
Target: 5'- -aCGcGCGGCGCAGAcGGauGAgcgaaucuacaugccGACCGCg -3' miRNA: 3'- aaGC-UGCCGCGUUU-UCgcCU---------------UUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 155204 | 0.66 | 0.980159 |
Target: 5'- --aGGCGGCGUuucgugguugggcgaAAGAGC--AGACCGCa -3' miRNA: 3'- aagCUGCCGCG---------------UUUUCGccUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 36177 | 0.66 | 0.980159 |
Target: 5'- --aGGCGGCGUuucgugguugggcgaAAGAGC--AGACCGCa -3' miRNA: 3'- aagCUGCCGCG---------------UUUUCGccUUUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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