miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 122212 0.66 0.97688
Target:  5'- -gCGACGGCGCGGGGaaGGGcuuauuUCGCa -3'
miRNA:   3'- aaGCUGCCGCGUUUUcgCCUuu----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 106741 0.66 0.97688
Target:  5'- --gGAUGGUGC----GgGGGAGCCGCc -3'
miRNA:   3'- aagCUGCCGCGuuuuCgCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 32690 0.66 0.976631
Target:  5'- -gUGGCGGC-CAGGcuuuuAGCGGGggugaggugucauAACCGCu -3'
miRNA:   3'- aaGCUGCCGcGUUU-----UCGCCU-------------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 35984 0.66 0.974305
Target:  5'- --aGGgGGCGCgGAGAGC-GAAACgCGCa -3'
miRNA:   3'- aagCUgCCGCG-UUUUCGcCUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 97052 0.66 0.974305
Target:  5'- gUCGAUaaGCGCAuggucuccguGAGGCGGAAaauaGCuCGCa -3'
miRNA:   3'- aAGCUGc-CGCGU----------UUUCGCCUU----UG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 37788 0.66 0.974305
Target:  5'- cUCGA-GGCGagc-GGCGGAGaagaggcgcGCCGCc -3'
miRNA:   3'- aAGCUgCCGCguuuUCGCCUU---------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 18055 0.66 0.97688
Target:  5'- -gCGGCGGCGCcgcGAGCcaGGGCgCGCg -3'
miRNA:   3'- aaGCUGCCGCGuu-UUCGccUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 78186 0.66 0.980597
Target:  5'- -aCGACGGcCGCAcaauacgcuaCGGAcACCGCc -3'
miRNA:   3'- aaGCUGCC-GCGUuuuc------GCCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 120073 0.66 0.97926
Target:  5'- -gUGGCGGaCGCcggcuAGCGGGAGUCGUg -3'
miRNA:   3'- aaGCUGCC-GCGuuu--UCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 154033 0.66 0.97926
Target:  5'- -gCGAgCGGCGCucgaagAGGAGCGcuGGCCGUc -3'
miRNA:   3'- aaGCU-GCCGCG------UUUUCGCcuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 108597 0.66 0.981453
Target:  5'- cUCGACacguuGGCGC----GCGG-GGCCGCc -3'
miRNA:   3'- aAGCUG-----CCGCGuuuuCGCCuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 124310 0.66 0.97688
Target:  5'- --gGACGGCGgGGcGGCGGcuGAcCCGUg -3'
miRNA:   3'- aagCUGCCGCgUUuUCGCC--UUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 127248 0.66 0.97688
Target:  5'- -aCG-CGGC-CAucGGCcGAAGCCGCa -3'
miRNA:   3'- aaGCuGCCGcGUuuUCGcCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 127324 0.66 0.971529
Target:  5'- -cCGugGGCGaCGGGGGCaccugcGCCGCg -3'
miRNA:   3'- aaGCugCCGC-GUUUUCGccuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 112344 0.66 0.974305
Target:  5'- cUUCGAgGGCaGCuuu-GgGGAuuuuGCCGCg -3'
miRNA:   3'- -AAGCUgCCG-CGuuuuCgCCUu---UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 94411 0.66 0.975359
Target:  5'- -cCG-CGGCGCGgacugcgcgaucgcuGAcGUGGGAugCGCg -3'
miRNA:   3'- aaGCuGCCGCGU---------------UUuCGCCUUugGCG- -5'
24397 3' -52.8 NC_005264.1 + 13319 0.66 0.976381
Target:  5'- -aCGACGGCGacgccuggcuAAGCcgaaGGGAACgGCg -3'
miRNA:   3'- aaGCUGCCGCguu-------UUCG----CCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 116238 0.66 0.974305
Target:  5'- -aCGACGGUGcCGGGAGCucc-GCCGUg -3'
miRNA:   3'- aaGCUGCCGC-GUUUUCGccuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 146672 0.66 0.971529
Target:  5'- -cCGACcuccGCGC-AGGGCGGcauuGCCGCc -3'
miRNA:   3'- aaGCUGc---CGCGuUUUCGCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 125465 0.66 0.971529
Target:  5'- -gCGGCGGCGuCGcuGGCGGAGAa--- -3'
miRNA:   3'- aaGCUGCCGC-GUuuUCGCCUUUggcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.