miRNA display CGI


Results 61 - 80 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 35006 0.66 0.97926
Target:  5'- -gCGAgCGGCGCucgaagAGGAGCGcuGGCCGUc -3'
miRNA:   3'- aaGCU-GCCGCG------UUUUCGCcuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 103536 0.66 0.97926
Target:  5'- cUCGagcggauauGCGGCGgAAcGGCaGAcGCCGCa -3'
miRNA:   3'- aAGC---------UGCCGCgUUuUCGcCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 23751 0.66 0.981453
Target:  5'- gUCG-CGGUGCAGAccuuagaccaAGUuugGGGAACgGCg -3'
miRNA:   3'- aAGCuGCCGCGUUU----------UCG---CCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 36177 0.66 0.980159
Target:  5'- --aGGCGGCGUuucgugguugggcgaAAGAGC--AGACCGCa -3'
miRNA:   3'- aagCUGCCGCG---------------UUUUCGccUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 104097 0.66 0.97926
Target:  5'- -cUGAUaGCGC---AGCGGcgGCCGCg -3'
miRNA:   3'- aaGCUGcCGCGuuuUCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 104393 0.66 0.97926
Target:  5'- aUCGACgccaaGGacauCGAAGGCGGAGACCu- -3'
miRNA:   3'- aAGCUG-----CCgc--GUUUUCGCCUUUGGcg -5'
24397 3' -52.8 NC_005264.1 + 157434 0.66 0.97926
Target:  5'- aUCGG-GGCGCugaaguacGAGCGGGAAauacagaCGCg -3'
miRNA:   3'- aAGCUgCCGCGuu------UUCGCCUUUg------GCG- -5'
24397 3' -52.8 NC_005264.1 + 45411 0.66 0.981453
Target:  5'- --gGGCGGCGCccu-GCGc--GCCGCg -3'
miRNA:   3'- aagCUGCCGCGuuuuCGCcuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 8221 0.66 0.97688
Target:  5'- -aCG-CGGC-CAucGGCcGAAGCCGCa -3'
miRNA:   3'- aaGCuGCCGcGUuuUCGcCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 133320 0.66 0.971529
Target:  5'- --aGACGGUgGCGAGauGGCGGGucuuUCGCa -3'
miRNA:   3'- aagCUGCCG-CGUUU--UCGCCUuu--GGCG- -5'
24397 3' -52.8 NC_005264.1 + 33651 0.66 0.97124
Target:  5'- gUCGACGGUGCu--AGCcgacccaGGuAACCGg -3'
miRNA:   3'- aAGCUGCCGCGuuuUCG-------CCuUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 99883 0.66 0.97124
Target:  5'- -gCGAgucCGGaCGCuAAAGCGucgacgcGAGACCGCg -3'
miRNA:   3'- aaGCU---GCC-GCGuUUUCGC-------CUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 38364 0.66 0.980597
Target:  5'- --gGGCGGUuaggaccuccuccgGCGAGAGCGGcGAcgccgagacagauGCCGCg -3'
miRNA:   3'- aagCUGCCG--------------CGUUUUCGCC-UU-------------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 126272 0.66 0.97688
Target:  5'- -gCGuguUGGUccGCGGAGGCGGccauGCCGCu -3'
miRNA:   3'- aaGCu--GCCG--CGUUUUCGCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 54575 0.66 0.97688
Target:  5'- cUCGugGgGCGCGAcGGGuCGGAGAUggaGCu -3'
miRNA:   3'- aAGCugC-CGCGUU-UUC-GCCUUUGg--CG- -5'
24397 3' -52.8 NC_005264.1 + 34508 0.66 0.97688
Target:  5'- aUCGAC-GCGCAAguAAGCaGGAugCGg -3'
miRNA:   3'- aAGCUGcCGCGUU--UUCGcCUUugGCg -5'
24397 3' -52.8 NC_005264.1 + 78186 0.66 0.980597
Target:  5'- -aCGACGGcCGCAcaauacgcuaCGGAcACCGCc -3'
miRNA:   3'- aaGCUGCC-GCGUuuuc------GCCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 151752 0.66 0.976631
Target:  5'- cUCGACGcCGCAgcaucguaauuacGAGGCGGGuacuugccCCGCc -3'
miRNA:   3'- aAGCUGCcGCGU-------------UUUCGCCUuu------GGCG- -5'
24397 3' -52.8 NC_005264.1 + 20146 0.66 0.97688
Target:  5'- -gCGAUGGCGCGccgccGGCGcccaAGAUCGCg -3'
miRNA:   3'- aaGCUGCCGCGUuu---UCGCc---UUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 106741 0.66 0.97688
Target:  5'- --gGAUGGUGC----GgGGGAGCCGCc -3'
miRNA:   3'- aagCUGCCGCGuuuuCgCCUUUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.