miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 59425 0.66 0.978331
Target:  5'- gUCGAUGGCaaaacacGCAccguacgauuugucAAAGCGGcc-CCGCg -3'
miRNA:   3'- aAGCUGCCG-------CGU--------------UUUCGCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 62593 0.66 0.97903
Target:  5'- aUUGACcGCGCGAAGuagcggcGCGGAcguuccgagcAACUGCg -3'
miRNA:   3'- aAGCUGcCGCGUUUU-------CGCCU----------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 154033 0.66 0.97926
Target:  5'- -gCGAgCGGCGCucgaagAGGAGCGcuGGCCGUc -3'
miRNA:   3'- aaGCU-GCCGCG------UUUUCGCcuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 50301 0.66 0.97926
Target:  5'- uUUCGGCGGcCGguGAAGCuaGAGugCGa -3'
miRNA:   3'- -AAGCUGCC-GCguUUUCGc-CUUugGCg -5'
24397 3' -52.8 NC_005264.1 + 124310 0.66 0.97688
Target:  5'- --gGACGGCGgGGcGGCGGcuGAcCCGUg -3'
miRNA:   3'- aagCUGCCGCgUUuUCGCC--UUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 122212 0.66 0.97688
Target:  5'- -gCGACGGCGCGGGGaaGGGcuuauuUCGCa -3'
miRNA:   3'- aaGCUGCCGCGUUUUcgCCUuu----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 97052 0.66 0.974305
Target:  5'- gUCGAUaaGCGCAuggucuccguGAGGCGGAAaauaGCuCGCa -3'
miRNA:   3'- aAGCUGc-CGCGU----------UUUCGCCUU----UG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 95261 0.66 0.974305
Target:  5'- aUUUGuCGGC-CAu--GUGGAAACCGUu -3'
miRNA:   3'- -AAGCuGCCGcGUuuuCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 14050 0.66 0.97688
Target:  5'- -gUGGCGGgGCc-GGGUGGGAACgUGCa -3'
miRNA:   3'- aaGCUGCCgCGuuUUCGCCUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 129857 0.66 0.974305
Target:  5'- -cCGAUGGCGauau-GCGcGAGcCCGCg -3'
miRNA:   3'- aaGCUGCCGCguuuuCGC-CUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 18055 0.66 0.97688
Target:  5'- -gCGGCGGCGCcgcGAGCcaGGGCgCGCg -3'
miRNA:   3'- aaGCUGCCGCGuu-UUCGccUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 116238 0.66 0.974305
Target:  5'- -aCGACGGUGcCGGGAGCucc-GCCGUg -3'
miRNA:   3'- aaGCUGCCGC-GUUUUCGccuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 112344 0.66 0.974305
Target:  5'- cUUCGAgGGCaGCuuu-GgGGAuuuuGCCGCg -3'
miRNA:   3'- -AAGCUgCCG-CGuuuuCgCCUu---UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 37788 0.66 0.974305
Target:  5'- cUCGA-GGCGagc-GGCGGAGaagaggcgcGCCGCc -3'
miRNA:   3'- aAGCUgCCGCguuuUCGCCUU---------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 75087 0.66 0.974305
Target:  5'- cUUCG-CGGCGCu---GCGGcAGgCGCc -3'
miRNA:   3'- -AAGCuGCCGCGuuuuCGCCuUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 155272 0.67 0.96534
Target:  5'- --gGGCGGagccgcacgugGCGGAAGCGGGuaGGCCGUc -3'
miRNA:   3'- aagCUGCCg----------CGUUUUCGCCU--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36812 0.67 0.96534
Target:  5'- cUCuGCGGCGCA--GGCGaGgcGCgGCg -3'
miRNA:   3'- aAGcUGCCGCGUuuUCGC-CuuUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 135157 0.67 0.961915
Target:  5'- gUCGGCGaG-GCAGAGGCc--AGCCGCg -3'
miRNA:   3'- aAGCUGC-CgCGUUUUCGccuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 119113 0.67 0.968542
Target:  5'- cUCGcacuuauCGGCGCAc--GCGG--GCCGCu -3'
miRNA:   3'- aAGCu------GCCGCGUuuuCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 130810 0.67 0.968542
Target:  5'- cUCGcacucCGGgGCAgcccGAGGCGGuu-CCGCa -3'
miRNA:   3'- aAGCu----GCCgCGU----UUUCGCCuuuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.