miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 129497 0.75 0.597211
Target:  5'- -gCGGCGGCGCAGGguuuGGCGGc-GCCGg -3'
miRNA:   3'- aaGCUGCCGCGUUU----UCGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 154416 0.75 0.607635
Target:  5'- -aCGAUGGCGaCAAAGgcacaugcGCGGAAACgGCg -3'
miRNA:   3'- aaGCUGCCGC-GUUUU--------CGCCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 36543 0.75 0.607635
Target:  5'- aUCGGCcGCGCGcccgAAAGCGGcauGGCCGCc -3'
miRNA:   3'- aAGCUGcCGCGU----UUUCGCCu--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 55169 0.75 0.618078
Target:  5'- -gCGGCcucugGGCGCGgcugAAGGCGGcGACCGCg -3'
miRNA:   3'- aaGCUG-----CCGCGU----UUUCGCCuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 99519 0.75 0.618078
Target:  5'- cUUGGCGGgGCugaccgguAGGCGGGAGuCCGCa -3'
miRNA:   3'- aAGCUGCCgCGuu------UUCGCCUUU-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 90646 0.75 0.618078
Target:  5'- -cCGAagGGCGC----GCGGAGACCGCa -3'
miRNA:   3'- aaGCUg-CCGCGuuuuCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 101338 0.75 0.628533
Target:  5'- -aCGcGCGGCGCu--AGCcGAGACCGCg -3'
miRNA:   3'- aaGC-UGCCGCGuuuUCGcCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 117833 0.75 0.649441
Target:  5'- gUUCGAggggaGGCGC---GGCGGAGugCGCa -3'
miRNA:   3'- -AAGCUg----CCGCGuuuUCGCCUUugGCG- -5'
24397 3' -52.8 NC_005264.1 + 56822 0.74 0.657792
Target:  5'- gUCGGCGGCGCAugaucaucguuuGAGuCGGuaucGCCGCc -3'
miRNA:   3'- aAGCUGCCGCGUu-----------UUC-GCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 67202 0.74 0.659878
Target:  5'- -aCG-CGGCGCcuauAGUGGGAACCGUc -3'
miRNA:   3'- aaGCuGCCGCGuuu-UCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 6872 0.74 0.659878
Target:  5'- -cCGACGGCaGCcAGAGCGuccgcGAGCCGCg -3'
miRNA:   3'- aaGCUGCCG-CGuUUUCGCc----UUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 32915 0.74 0.691013
Target:  5'- cUCGAUcGCGCAGGGgucGCGGGGcGCCGCg -3'
miRNA:   3'- aAGCUGcCGCGUUUU---CGCCUU-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 21901 0.74 0.691013
Target:  5'- aUUCGGCGGCGCGu--GCGGucguaguGCUGUc -3'
miRNA:   3'- -AAGCUGCCGCGUuuuCGCCuu-----UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 132010 0.74 0.705401
Target:  5'- -aCGACGaCGCGagcccguucgagcacGAGGCGGAAACCGa -3'
miRNA:   3'- aaGCUGCcGCGU---------------UUUCGCCUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 12983 0.74 0.705401
Target:  5'- -aCGACGaCGCGagcccguucgagcacGAGGCGGAAACCGa -3'
miRNA:   3'- aaGCUGCcGCGU---------------UUUCGCCUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 81883 0.73 0.71153
Target:  5'- gUCGAUGGCGCcuuGGCGGcgaugggcgggcGAGCCaGCa -3'
miRNA:   3'- aAGCUGCCGCGuuuUCGCC------------UUUGG-CG- -5'
24397 3' -52.8 NC_005264.1 + 137445 0.73 0.71153
Target:  5'- -cUGGCGGUGCuccuGaCGGAAACCGUg -3'
miRNA:   3'- aaGCUGCCGCGuuuuC-GCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 101393 0.73 0.71153
Target:  5'- cUCGAgcaacuCGGCGCcgAGGAGCGG--GCCGCc -3'
miRNA:   3'- aAGCU------GCCGCG--UUUUCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 80109 0.73 0.721687
Target:  5'- aUCGAggUGGCGCu--AGCGGu--CCGCa -3'
miRNA:   3'- aAGCU--GCCGCGuuuUCGCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 100111 0.73 0.731764
Target:  5'- -gCGACGaCGCGGuuGCGGGAAUCGUc -3'
miRNA:   3'- aaGCUGCcGCGUUuuCGCCUUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.