miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 100111 0.73 0.731764
Target:  5'- -gCGACGaCGCGGuuGCGGGAAUCGUc -3'
miRNA:   3'- aaGCUGCcGCGUUuuCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 50555 0.73 0.731764
Target:  5'- gUCGAagcuaGGCGCGcgcguGCGGGAAgCGCa -3'
miRNA:   3'- aAGCUg----CCGCGUuuu--CGCCUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 136334 0.72 0.761415
Target:  5'- -cCGccGCGGCGUAGAAGCuGGuucggcGCCGCa -3'
miRNA:   3'- aaGC--UGCCGCGUUUUCG-CCuu----UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 138995 0.72 0.761415
Target:  5'- gUCG-UGGCuacagacaGCGAuAGCGGGAGCUGCg -3'
miRNA:   3'- aAGCuGCCG--------CGUUuUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 100429 0.72 0.761415
Target:  5'- --aGugGGUgaucGUAGAAGCGGAGGgCGCa -3'
miRNA:   3'- aagCugCCG----CGUUUUCGCCUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 56925 0.72 0.770113
Target:  5'- --aGAUGGCGUAGAgggggcaAGCGGAGAC-GCa -3'
miRNA:   3'- aagCUGCCGCGUUU-------UCGCCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 82363 0.72 0.779654
Target:  5'- cUUGGCGGCGa---AGCGGAGcacuucgcacaccACCGCu -3'
miRNA:   3'- aAGCUGCCGCguuuUCGCCUU-------------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 53782 0.72 0.780601
Target:  5'- gUCuGCGuuGUggGAGCGGGAGCUGCu -3'
miRNA:   3'- aAGcUGCcgCGuuUUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 5190 0.72 0.780601
Target:  5'- cUCG-CGGC-CGAAAcuuCGGAAGCCGCg -3'
miRNA:   3'- aAGCuGCCGcGUUUUc--GCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 96281 0.72 0.780601
Target:  5'- -gUGGCGGCGgAGcuuGUGGAAAUCGCc -3'
miRNA:   3'- aaGCUGCCGCgUUuu-CGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 112597 0.72 0.789058
Target:  5'- -gCGGCaGGUGCAcaaacugGGAGCGGGGcCCGCc -3'
miRNA:   3'- aaGCUG-CCGCGU-------UUUCGCCUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 128570 0.72 0.78999
Target:  5'- -gCGGCGgaGCGCAGcacGCGGAuuACCGCg -3'
miRNA:   3'- aaGCUGC--CGCGUUuu-CGCCUu-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 70705 0.72 0.78999
Target:  5'- -gCGACaGCGCGAAGaCGGAGACUGg -3'
miRNA:   3'- aaGCUGcCGCGUUUUcGCCUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 155447 0.72 0.798314
Target:  5'- -aCGACGGCGCcGGGGCcGcGAucgaagaaaugaaAACCGCg -3'
miRNA:   3'- aaGCUGCCGCGuUUUCG-C-CU-------------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 156600 0.72 0.799231
Target:  5'- -gCGACGGaggcgGCAAGucucGCGGcgGCCGCg -3'
miRNA:   3'- aaGCUGCCg----CGUUUu---CGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 37573 0.72 0.799231
Target:  5'- -gCGACGGaggcgGCAAGucucGCGGcgGCCGCg -3'
miRNA:   3'- aaGCUGCCg----CGUUUu---CGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 62445 0.72 0.799231
Target:  5'- -aCGACcaauacggGGCGCAGcAGCGGcauCCGCa -3'
miRNA:   3'- aaGCUG--------CCGCGUUuUCGCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 101490 0.72 0.799231
Target:  5'- cUUUGACGGC-CAu--GCGGGAGuuGCa -3'
miRNA:   3'- -AAGCUGCCGcGUuuuCGCCUUUggCG- -5'
24397 3' -52.8 NC_005264.1 + 107210 0.71 0.809213
Target:  5'- -gCGGCGGCGCGc--GCGGuuggcauucggcgccAGCCGCg -3'
miRNA:   3'- aaGCUGCCGCGUuuuCGCCu--------------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 30393 0.71 0.813684
Target:  5'- cUCGGCGGCgGCGGucgcgcgccgguGCGGAGAgCUGCg -3'
miRNA:   3'- aAGCUGCCG-CGUUuu----------CGCCUUU-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.