miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 30393 0.71 0.813684
Target:  5'- cUCGGCGGCgGCGGucgcgcgccgguGCGGAGAgCUGCg -3'
miRNA:   3'- aAGCUGCCG-CGUUuu----------CGCCUUU-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 114862 0.71 0.81723
Target:  5'- gUCGACGGUGaaucuAGGCGGAucGGCCa- -3'
miRNA:   3'- aAGCUGCCGCguu--UUCGCCU--UUGGcg -5'
24397 3' -52.8 NC_005264.1 + 132479 0.71 0.825971
Target:  5'- -gCGGCGGCGCcGAAGgGGcucCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuUUUCgCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 13452 0.71 0.825971
Target:  5'- -gCGGCGGCGCcGAAGgGGcucCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuUUUCgCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 45776 0.71 0.825971
Target:  5'- -gCGAUgGGCGCcGGAGCGGcuauugcggucuGGGCCGCc -3'
miRNA:   3'- aaGCUG-CCGCGuUUUCGCC------------UUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 79880 0.71 0.834528
Target:  5'- -aCGGgGGCGC---GGCGGcGACCGUc -3'
miRNA:   3'- aaGCUgCCGCGuuuUCGCCuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 27181 0.71 0.834528
Target:  5'- -aCGGCGGCGCAua---GGAAcuuuCCGCa -3'
miRNA:   3'- aaGCUGCCGCGUuuucgCCUUu---GGCG- -5'
24397 3' -52.8 NC_005264.1 + 105491 0.71 0.834528
Target:  5'- -aCGACGGCGauccGGCGGAggaagaggAugCGCg -3'
miRNA:   3'- aaGCUGCCGCguuuUCGCCU--------UugGCG- -5'
24397 3' -52.8 NC_005264.1 + 16566 0.71 0.834528
Target:  5'- gUgGGCGGCGCcGGGGCGGcgG-CGCa -3'
miRNA:   3'- aAgCUGCCGCGuUUUCGCCuuUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 153373 0.71 0.842892
Target:  5'- --aGAC-GCGCGAagcguugcgcGAGgGGAAACCGCu -3'
miRNA:   3'- aagCUGcCGCGUU----------UUCgCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 53362 0.71 0.842892
Target:  5'- --gGACGGCGUGGcAAGCGuGAugCGCg -3'
miRNA:   3'- aagCUGCCGCGUU-UUCGCcUUugGCG- -5'
24397 3' -52.8 NC_005264.1 + 40972 0.71 0.84944
Target:  5'- -gCGACGGCGCGAgcGCGaccggcccuCCGCc -3'
miRNA:   3'- aaGCUGCCGCGUUuuCGCcuuu-----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 34051 0.71 0.84944
Target:  5'- -aCGGCaGCGUuaucccguuGUGGAAGCCGCg -3'
miRNA:   3'- aaGCUGcCGCGuuuu-----CGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 159999 0.71 0.84944
Target:  5'- -gCGACGGCGCGAgcGCGaccggcccuCCGCc -3'
miRNA:   3'- aaGCUGCCGCGUUuuCGCcuuu-----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 4459 0.71 0.850249
Target:  5'- -aCGGCucccauaGGCGaggcuAAGCGGAAACCGUc -3'
miRNA:   3'- aaGCUG-------CCGCguu--UUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 34112 0.71 0.851057
Target:  5'- cUCaGCGGCGCGAAacagcgucgaGGCGcGAGcCCGCc -3'
miRNA:   3'- aAGcUGCCGCGUUU----------UCGC-CUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 31028 0.71 0.851057
Target:  5'- -gCGACGGUGCcgccuAGCGGucgugcGGCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuuu--UCGCCu-----UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 29241 0.71 0.851057
Target:  5'- gUCGA-GGaGCAc-AGCGGAGACUGCg -3'
miRNA:   3'- aAGCUgCCgCGUuuUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 77707 0.71 0.851057
Target:  5'- cUC-ACGGCGCAGGAGUuccaagaaccGGAgGACUGCg -3'
miRNA:   3'- aAGcUGCCGCGUUUUCG----------CCU-UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 20446 0.71 0.851057
Target:  5'- -aUGugGGCGUAGccGGCGGAcAGCgGCg -3'
miRNA:   3'- aaGCugCCGCGUUu-UCGCCU-UUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.