miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 34112 0.71 0.851057
Target:  5'- cUCaGCGGCGCGAAacagcgucgaGGCGcGAGcCCGCc -3'
miRNA:   3'- aAGcUGCCGCGUUU----------UCGC-CUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 31028 0.71 0.851057
Target:  5'- -gCGACGGUGCcgccuAGCGGucgugcGGCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuuu--UCGCCu-----UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 20446 0.71 0.851057
Target:  5'- -aUGugGGCGUAGccGGCGGAcAGCgGCg -3'
miRNA:   3'- aaGCugCCGCGUUu-UCGCCU-UUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 4742 0.7 0.859014
Target:  5'- -cCGAgcCGGCGUccGGGGGUGGAccGCCGCg -3'
miRNA:   3'- aaGCU--GCCGCG--UUUUCGCCUu-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 46094 0.7 0.859014
Target:  5'- gUCGACGGUuggGCAAccuAGCGuGugaAGGCCGCa -3'
miRNA:   3'- aAGCUGCCG---CGUUu--UCGC-C---UUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 123768 0.7 0.859014
Target:  5'- -cCGAgcCGGCGUccGGGGGUGGAccGCCGCg -3'
miRNA:   3'- aaGCU--GCCGCG--UUUUCGCCUu-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 136438 0.7 0.859014
Target:  5'- --aGGCGGaagaGCAugGGCGcuGAGGCCGCg -3'
miRNA:   3'- aagCUGCCg---CGUuuUCGC--CUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 116038 0.7 0.865993
Target:  5'- cUUCGGCGGCGCGGAuucAGUGuacaucaauucuGAGuuugugcGCCGCg -3'
miRNA:   3'- -AAGCUGCCGCGUUU---UCGC------------CUU-------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 130251 0.7 0.865993
Target:  5'- uUUCGAaccuuuugGGCGCGGGugcgcgacguugcGGCGGcuACCGCg -3'
miRNA:   3'- -AAGCUg-------CCGCGUUU-------------UCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 58031 0.7 0.865993
Target:  5'- gUCGuGCGGCGCccgcucgucucgcGAAAGaGGAGACuCGCg -3'
miRNA:   3'- aAGC-UGCCGCG-------------UUUUCgCCUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 126455 0.7 0.866757
Target:  5'- --aGAUGGCGCcuAGcGCGGAGAuacuccCCGCg -3'
miRNA:   3'- aagCUGCCGCGuuUU-CGCCUUU------GGCG- -5'
24397 3' -52.8 NC_005264.1 + 40917 0.7 0.866757
Target:  5'- cUUCGGCGGCGCGGGcuAGCuucuGAAcagacCCGCa -3'
miRNA:   3'- -AAGCUGCCGCGUUU--UCGc---CUUu----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 87160 0.7 0.874281
Target:  5'- --aGACGGCGCugc-GCGcGAcuCCGCa -3'
miRNA:   3'- aagCUGCCGCGuuuuCGC-CUuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 56455 0.7 0.880858
Target:  5'- --aGGCGGCGUAcagacacggguaGAAcGCGGAgaaaucuAACCGCg -3'
miRNA:   3'- aagCUGCCGCGU------------UUU-CGCCU-------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 124465 0.7 0.880858
Target:  5'- uUUCGAgagcgaGGUGCGGAAGCGGcgagaaaAAGCgGCa -3'
miRNA:   3'- -AAGCUg-----CCGCGUUUUCGCC-------UUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 11826 0.7 0.881578
Target:  5'- aUCGAUGGCGCuguAGCGcGcaucGGACaCGCg -3'
miRNA:   3'- aAGCUGCCGCGuuuUCGC-C----UUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 130852 0.7 0.881578
Target:  5'- aUCGAUGGCGCuguAGCGcGcaucGGACaCGCg -3'
miRNA:   3'- aAGCUGCCGCGuuuUCGC-C----UUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 68022 0.7 0.881578
Target:  5'- -gCGGa-GCGCcaAAGAGCGGAuAACCGCu -3'
miRNA:   3'- aaGCUgcCGCG--UUUUCGCCU-UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 144302 0.7 0.881578
Target:  5'- -aCGcCGGCGCGcccucAGGgGGAGACgGCg -3'
miRNA:   3'- aaGCuGCCGCGUu----UUCgCCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 71848 0.7 0.888643
Target:  5'- -aCGACGcGuCGCGGcGGCGGuguuCCGCg -3'
miRNA:   3'- aaGCUGC-C-GCGUUuUCGCCuuu-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.