miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 155500 0.7 0.888643
Target:  5'- uUUUGcCGGUGCGAAAGaaagauaGGGuuCCGCa -3'
miRNA:   3'- -AAGCuGCCGCGUUUUCg------CCUuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 101441 0.7 0.888643
Target:  5'- -cCGgaaGCGGCGaAGGAGCgccuggaacggGGAGACCGCg -3'
miRNA:   3'- aaGC---UGCCGCgUUUUCG-----------CCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 98670 0.7 0.888643
Target:  5'- -gUGuCGGCGCu--AGCuuagaGGGAGCCGCu -3'
miRNA:   3'- aaGCuGCCGCGuuuUCG-----CCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 71848 0.7 0.888643
Target:  5'- -aCGACGcGuCGCGGcGGCGGuguuCCGCg -3'
miRNA:   3'- aaGCUGC-C-GCGUUuUCGCCuuu-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 155777 0.69 0.895473
Target:  5'- -gCGACGGCGCcGGccGGCGccgucGCCGCu -3'
miRNA:   3'- aaGCUGCCGCGuUU--UCGCcuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36751 0.69 0.895473
Target:  5'- -gCGACGGCGCcGGccGGCGccgucGCCGCu -3'
miRNA:   3'- aaGCUGCCGCGuUU--UCGCcuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 104032 0.69 0.895473
Target:  5'- gUUUGACGcGCGCc---GCGGAAAUCGg -3'
miRNA:   3'- -AAGCUGC-CGCGuuuuCGCCUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 20259 0.69 0.895473
Target:  5'- gUUG-CGGCGCGGccucGCGGAgggGACCGUc -3'
miRNA:   3'- aAGCuGCCGCGUUuu--CGCCU---UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 116945 0.69 0.899455
Target:  5'- -gCGGCGGCGCAAAuacacugaaguucGUGGcgGCCGa -3'
miRNA:   3'- aaGCUGCCGCGUUUu------------CGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 73800 0.69 0.900111
Target:  5'- --aGAUGGCGCAGGGGuCGGuuaucagcucguuuGAACCGa -3'
miRNA:   3'- aagCUGCCGCGUUUUC-GCC--------------UUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 110811 0.69 0.902062
Target:  5'- ---aGCGGCGCGAcGGCGGGGuuauuucCCGUa -3'
miRNA:   3'- aagcUGCCGCGUUuUCGCCUUu------GGCG- -5'
24397 3' -52.8 NC_005264.1 + 66504 0.69 0.902062
Target:  5'- -gCGAUGGCGCGGuacagcGAGCGugcccugacGAcGACCGCg -3'
miRNA:   3'- aaGCUGCCGCGUU------UUCGC---------CU-UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 105657 0.69 0.902062
Target:  5'- --gGGCGGCGCuuugccGGCGGcAGACCauGCg -3'
miRNA:   3'- aagCUGCCGCGuuu---UCGCC-UUUGG--CG- -5'
24397 3' -52.8 NC_005264.1 + 43677 0.69 0.902062
Target:  5'- -gCGcCGGCGUuAAGGCGGccGCCGg -3'
miRNA:   3'- aaGCuGCCGCGuUUUCGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 162703 0.69 0.902062
Target:  5'- -gCGcCGGCGUuAAGGCGGccGCCGg -3'
miRNA:   3'- aaGCuGCCGCGuUUUCGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 65556 0.69 0.908409
Target:  5'- aUUGGCuGCGCGAGgcAGCGGccacuACCGUg -3'
miRNA:   3'- aAGCUGcCGCGUUU--UCGCCuu---UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 25628 0.69 0.908409
Target:  5'- -aCGGCGGCGguGGGGCcgcgcuCCGCg -3'
miRNA:   3'- aaGCUGCCGCguUUUCGccuuu-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 136572 0.69 0.908409
Target:  5'- cUCGGUGGCGUcgAAGAGCGGGucguagagagGGCCGa -3'
miRNA:   3'- aAGCUGCCGCG--UUUUCGCCU----------UUGGCg -5'
24397 3' -52.8 NC_005264.1 + 75325 0.69 0.914509
Target:  5'- --gGGCGGCucauCGAucGCGGA-GCCGCa -3'
miRNA:   3'- aagCUGCCGc---GUUuuCGCCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 75135 0.69 0.914509
Target:  5'- -aUGGCcGCGCGucAGaugGGAAACCGCa -3'
miRNA:   3'- aaGCUGcCGCGUuuUCg--CCUUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.