miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 78501 0.66 0.97926
Target:  5'- cUCGACGGUGUu--GGC----ACCGCg -3'
miRNA:   3'- aAGCUGCCGCGuuuUCGccuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 154033 0.66 0.97926
Target:  5'- -gCGAgCGGCGCucgaagAGGAGCGcuGGCCGUc -3'
miRNA:   3'- aaGCU-GCCGCG------UUUUCGCcuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 117241 0.66 0.97926
Target:  5'- cUCGcccCGGCGau---GCGGAgaacgaGACCGCg -3'
miRNA:   3'- aAGCu--GCCGCguuuuCGCCU------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 138910 0.66 0.97926
Target:  5'- -cCGGCGGCGCGAcca---GAACCGCc -3'
miRNA:   3'- aaGCUGCCGCGUUuucgccUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 50301 0.66 0.97926
Target:  5'- uUUCGGCGGcCGguGAAGCuaGAGugCGa -3'
miRNA:   3'- -AAGCUGCC-GCguUUUCGc-CUUugGCg -5'
24397 3' -52.8 NC_005264.1 + 104393 0.66 0.97926
Target:  5'- aUCGACgccaaGGacauCGAAGGCGGAGACCu- -3'
miRNA:   3'- aAGCUG-----CCgc--GUUUUCGCCUUUGGcg -5'
24397 3' -52.8 NC_005264.1 + 104097 0.66 0.97926
Target:  5'- -cUGAUaGCGC---AGCGGcgGCCGCg -3'
miRNA:   3'- aaGCUGcCGCGuuuUCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 120073 0.66 0.97926
Target:  5'- -gUGGCGGaCGCcggcuAGCGGGAGUCGUg -3'
miRNA:   3'- aaGCUGCC-GCGuuu--UCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 144408 0.66 0.97926
Target:  5'- cUUCGACcccGCGCc-GAGCGaGAGGgCGCg -3'
miRNA:   3'- -AAGCUGc--CGCGuuUUCGC-CUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 103536 0.66 0.97926
Target:  5'- cUCGagcggauauGCGGCGgAAcGGCaGAcGCCGCa -3'
miRNA:   3'- aAGC---------UGCCGCgUUuUCGcCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 153507 0.66 0.97926
Target:  5'- -aCGGCGGcCGCcccuGGCGGGGACg-- -3'
miRNA:   3'- aaGCUGCC-GCGuuu-UCGCCUUUGgcg -5'
24397 3' -52.8 NC_005264.1 + 157434 0.66 0.97926
Target:  5'- aUCGG-GGCGCugaaguacGAGCGGGAAauacagaCGCg -3'
miRNA:   3'- aAGCUgCCGCGuu------UUCGCCUUUg------GCG- -5'
24397 3' -52.8 NC_005264.1 + 45029 0.66 0.97926
Target:  5'- --gGACGGCgGCAGGauggacGGCgacgaGGAuGCCGCg -3'
miRNA:   3'- aagCUGCCG-CGUUU------UCG-----CCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 35006 0.66 0.97926
Target:  5'- -gCGAgCGGCGCucgaagAGGAGCGcuGGCCGUc -3'
miRNA:   3'- aaGCU-GCCGCG------UUUUCGCcuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 117430 0.66 0.97926
Target:  5'- gUCG-CGGCGCGcAGGGCGccgcccuccaucGuuuGCCGCg -3'
miRNA:   3'- aAGCuGCCGCGU-UUUCGC------------Cuu-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 62593 0.66 0.97903
Target:  5'- aUUGACcGCGCGAAGuagcggcGCGGAcguuccgagcAACUGCg -3'
miRNA:   3'- aAGCUGcCGCGUUUU-------CGCCU----------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 59425 0.66 0.978331
Target:  5'- gUCGAUGGCaaaacacGCAccguacgauuugucAAAGCGGcc-CCGCg -3'
miRNA:   3'- aAGCUGCCG-------CGU--------------UUUCGCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 131615 0.66 0.977855
Target:  5'- -gCGugGGCGCGc--GCGGAGAagaacagauggucaCGCc -3'
miRNA:   3'- aaGCugCCGCGUuuuCGCCUUUg-------------GCG- -5'
24397 3' -52.8 NC_005264.1 + 153535 0.66 0.97688
Target:  5'- aUCGAC-GCGCAAguAAGCaGGAugCGg -3'
miRNA:   3'- aAGCUGcCGCGUU--UUCGcCUUugGCg -5'
24397 3' -52.8 NC_005264.1 + 14050 0.66 0.97688
Target:  5'- -gUGGCGGgGCc-GGGUGGGAACgUGCa -3'
miRNA:   3'- aaGCUGCCgCGuuUUCGCCUUUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.