miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 54575 0.66 0.97688
Target:  5'- cUCGugGgGCGCGAcGGGuCGGAGAUggaGCu -3'
miRNA:   3'- aAGCugC-CGCGUU-UUC-GCCUUUGg--CG- -5'
24397 3' -52.8 NC_005264.1 + 126272 0.66 0.97688
Target:  5'- -gCGuguUGGUccGCGGAGGCGGccauGCCGCu -3'
miRNA:   3'- aaGCu--GCCG--CGUUUUCGCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 8221 0.66 0.97688
Target:  5'- -aCG-CGGC-CAucGGCcGAAGCCGCa -3'
miRNA:   3'- aaGCuGCCGcGUuuUCGcCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 21247 0.66 0.97688
Target:  5'- -aCGACGGCuCGAGuguGCGc--GCCGCg -3'
miRNA:   3'- aaGCUGCCGcGUUUu--CGCcuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 113263 0.66 0.97688
Target:  5'- -cCGGCGGCGUGcgccgagaagguGAAGCGG---UCGCu -3'
miRNA:   3'- aaGCUGCCGCGU------------UUUCGCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 5283 0.66 0.97688
Target:  5'- --gGACGGCGgGGcGGCGGcuGAcCCGUg -3'
miRNA:   3'- aagCUGCCGCgUUuUCGCC--UUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 145972 0.66 0.97688
Target:  5'- cUUCGcCGGCGCGAAuacgaacugcGCGGcgGCUGg -3'
miRNA:   3'- -AAGCuGCCGCGUUUu---------CGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 34508 0.66 0.97688
Target:  5'- aUCGAC-GCGCAAguAAGCaGGAugCGg -3'
miRNA:   3'- aAGCUGcCGCGUU--UUCGcCUUugGCg -5'
24397 3' -52.8 NC_005264.1 + 122212 0.66 0.97688
Target:  5'- -gCGACGGCGCGGGGaaGGGcuuauuUCGCa -3'
miRNA:   3'- aaGCUGCCGCGUUUUcgCCUuu----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 18055 0.66 0.97688
Target:  5'- -gCGGCGGCGCcgcGAGCcaGGGCgCGCg -3'
miRNA:   3'- aaGCUGCCGCGuu-UUCGccUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 32248 0.66 0.97688
Target:  5'- -aUGACGGCGUucauGAuGUGGAAgggaGCCGa -3'
miRNA:   3'- aaGCUGCCGCGu---UUuCGCCUU----UGGCg -5'
24397 3' -52.8 NC_005264.1 + 117025 0.66 0.97688
Target:  5'- -aUGACGaguacaGCGCGAucagcgcGGCGGcccAGACCGCa -3'
miRNA:   3'- aaGCUGC------CGCGUUu------UCGCC---UUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 127248 0.66 0.97688
Target:  5'- -aCG-CGGC-CAucGGCcGAAGCCGCa -3'
miRNA:   3'- aaGCuGCCGcGUuuUCGcCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 106741 0.66 0.97688
Target:  5'- --gGAUGGUGC----GgGGGAGCCGCc -3'
miRNA:   3'- aagCUGCCGCGuuuuCgCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 108434 0.66 0.97688
Target:  5'- cUCGuaGCGcGUGgGGAgauuAGCGGAGuuGCCGCa -3'
miRNA:   3'- aAGC--UGC-CGCgUUU----UCGCCUU--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 124310 0.66 0.97688
Target:  5'- --gGACGGCGgGGcGGCGGcuGAcCCGUg -3'
miRNA:   3'- aagCUGCCGCgUUuUCGCC--UUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 14050 0.66 0.97688
Target:  5'- -gUGGCGGgGCc-GGGUGGGAACgUGCa -3'
miRNA:   3'- aaGCUGCCgCGuuUUCGCCUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 3185 0.66 0.97688
Target:  5'- -gCGACGGCGCGGGGaaGGGcuuauuUCGCa -3'
miRNA:   3'- aaGCUGCCGCGUUUUcgCCUuu----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 153535 0.66 0.97688
Target:  5'- aUCGAC-GCGCAAguAAGCaGGAugCGg -3'
miRNA:   3'- aAGCUGcCGCGUU--UUCGcCUUugGCg -5'
24397 3' -52.8 NC_005264.1 + 32690 0.66 0.976631
Target:  5'- -gUGGCGGC-CAGGcuuuuAGCGGGggugaggugucauAACCGCu -3'
miRNA:   3'- aaGCUGCCGcGUUU-----UCGCCU-------------UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.