Results 61 - 80 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24397 | 3' | -52.8 | NC_005264.1 | + | 151752 | 0.66 | 0.976631 |
Target: 5'- cUCGACGcCGCAgcaucguaauuacGAGGCGGGuacuugccCCGCc -3' miRNA: 3'- aAGCUGCcGCGU-------------UUUCGCCUuu------GGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 13319 | 0.66 | 0.976381 |
Target: 5'- -aCGACGGCGacgccuggcuAAGCcgaaGGGAACgGCg -3' miRNA: 3'- aaGCUGCCGCguu-------UUCG----CCUUUGgCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 142976 | 0.66 | 0.976128 |
Target: 5'- -gCGGCGGUcucucgggcaugagGCGGgcGUGGGGACcCGCa -3' miRNA: 3'- aaGCUGCCG--------------CGUUuuCGCCUUUG-GCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 94411 | 0.66 | 0.975359 |
Target: 5'- -cCG-CGGCGCGgacugcgcgaucgcuGAcGUGGGAugCGCg -3' miRNA: 3'- aaGCuGCCGCGU---------------UUuCGCCUUugGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 116238 | 0.66 | 0.974305 |
Target: 5'- -aCGACGGUGcCGGGAGCucc-GCCGUg -3' miRNA: 3'- aaGCUGCCGC-GUUUUCGccuuUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 22205 | 0.66 | 0.974305 |
Target: 5'- -gUGGCGuGCGCGGcAAGUGGAGucgUCGCc -3' miRNA: 3'- aaGCUGC-CGCGUU-UUCGCCUUu--GGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 147147 | 0.66 | 0.974305 |
Target: 5'- cUCGACGGCGUucuguGCGaGGAGCa-- -3' miRNA: 3'- aAGCUGCCGCGuuuu-CGC-CUUUGgcg -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 74334 | 0.66 | 0.974305 |
Target: 5'- gUCGuCGGUGaucuCAGAGGCGauGAAGuCCGCg -3' miRNA: 3'- aAGCuGCCGC----GUUUUCGC--CUUU-GGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 129857 | 0.66 | 0.974305 |
Target: 5'- -cCGAUGGCGauau-GCGcGAGcCCGCg -3' miRNA: 3'- aaGCUGCCGCguuuuCGC-CUUuGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 95261 | 0.66 | 0.974305 |
Target: 5'- aUUUGuCGGC-CAu--GUGGAAACCGUu -3' miRNA: 3'- -AAGCuGCCGcGUuuuCGCCUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 97052 | 0.66 | 0.974305 |
Target: 5'- gUCGAUaaGCGCAuggucuccguGAGGCGGAAaauaGCuCGCa -3' miRNA: 3'- aAGCUGc-CGCGU----------UUUCGCCUU----UG-GCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 75087 | 0.66 | 0.974305 |
Target: 5'- cUUCG-CGGCGCu---GCGGcAGgCGCc -3' miRNA: 3'- -AAGCuGCCGCGuuuuCGCCuUUgGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 35984 | 0.66 | 0.974305 |
Target: 5'- --aGGgGGCGCgGAGAGC-GAAACgCGCa -3' miRNA: 3'- aagCUgCCGCG-UUUUCGcCUUUG-GCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 54919 | 0.66 | 0.974305 |
Target: 5'- gUCG-CGGCGCugcuGGCGaacGGCUGCg -3' miRNA: 3'- aAGCuGCCGCGuuu-UCGCcu-UUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 37788 | 0.66 | 0.974305 |
Target: 5'- cUCGA-GGCGagc-GGCGGAGaagaggcgcGCCGCc -3' miRNA: 3'- aAGCUgCCGCguuuUCGCCUU---------UGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 10831 | 0.66 | 0.974305 |
Target: 5'- -cCGAUGGCGauau-GCGcGAGcCCGCg -3' miRNA: 3'- aaGCUGCCGCguuuuCGC-CUUuGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 112344 | 0.66 | 0.974305 |
Target: 5'- cUUCGAgGGCaGCuuu-GgGGAuuuuGCCGCg -3' miRNA: 3'- -AAGCUgCCG-CGuuuuCgCCUu---UGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 158118 | 0.66 | 0.971529 |
Target: 5'- cUCGGCGG-GCAGcGGCgucuGGAccAGCUGCu -3' miRNA: 3'- aAGCUGCCgCGUUuUCG----CCU--UUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 147554 | 0.66 | 0.971529 |
Target: 5'- -cCG-CGGCGCGAA-GUGGccGCCGa -3' miRNA: 3'- aaGCuGCCGCGUUUuCGCCuuUGGCg -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 146672 | 0.66 | 0.971529 |
Target: 5'- -cCGACcuccGCGC-AGGGCGGcauuGCCGCc -3' miRNA: 3'- aaGCUGc---CGCGuUUUCGCCuu--UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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