miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 56126 0.66 0.971529
Target:  5'- gUCGACcacuaGGCGCGcGAGUGucgcguuGGCCGCu -3'
miRNA:   3'- aAGCUG-----CCGCGUuUUCGCcu-----UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 79996 0.66 0.971529
Target:  5'- -cCGGCcGCGCGGAAGaGGAGG-CGCg -3'
miRNA:   3'- aaGCUGcCGCGUUUUCgCCUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 127324 0.66 0.971529
Target:  5'- -cCGugGGCGaCGGGGGCaccugcGCCGCg -3'
miRNA:   3'- aaGCugCCGC-GUUUUCGccuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 109622 0.66 0.971529
Target:  5'- ---aAUGGCGU--GGGCGGggGgCGCg -3'
miRNA:   3'- aagcUGCCGCGuuUUCGCCuuUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 39091 0.66 0.971529
Target:  5'- cUCGGCGG-GCAGcGGCgucuGGAccAGCUGCu -3'
miRNA:   3'- aAGCUGCCgCGUUuUCG----CCU--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 79698 0.66 0.971529
Target:  5'- cUCGGCGuCGCuAGAucuaacgcaGGCGGAGcuauacgagguGCCGCa -3'
miRNA:   3'- aAGCUGCcGCG-UUU---------UCGCCUU-----------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 8297 0.66 0.971529
Target:  5'- -cCGugGGCGaCGGGGGCaccugcGCCGCg -3'
miRNA:   3'- aaGCugCCGC-GUUUUCGccuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 158118 0.66 0.971529
Target:  5'- cUCGGCGG-GCAGcGGCgucuGGAccAGCUGCu -3'
miRNA:   3'- aAGCUGCCgCGUUuUCG----CCU--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 147554 0.66 0.971529
Target:  5'- -cCG-CGGCGCGAA-GUGGccGCCGa -3'
miRNA:   3'- aaGCuGCCGCGUUUuCGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 146672 0.66 0.971529
Target:  5'- -cCGACcuccGCGC-AGGGCGGcauuGCCGCc -3'
miRNA:   3'- aaGCUGc---CGCGuUUUCGCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 125465 0.66 0.971529
Target:  5'- -gCGGCGGCGuCGcuGGCGGAGAa--- -3'
miRNA:   3'- aaGCUGCCGC-GUuuUCGCCUUUggcg -5'
24397 3' -52.8 NC_005264.1 + 104907 0.66 0.971529
Target:  5'- -cCGAacaGGCGCcauAGCGGGAGUgGCa -3'
miRNA:   3'- aaGCUg--CCGCGuuuUCGCCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 133320 0.66 0.971529
Target:  5'- --aGACGGUgGCGAGauGGCGGGucuuUCGCa -3'
miRNA:   3'- aagCUGCCG-CGUUU--UCGCCUuu--GGCG- -5'
24397 3' -52.8 NC_005264.1 + 33651 0.66 0.97124
Target:  5'- gUCGACGGUGCu--AGCcgacccaGGuAACCGg -3'
miRNA:   3'- aAGCUGCCGCGuuuUCG-------CCuUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 99883 0.66 0.97124
Target:  5'- -gCGAgucCGGaCGCuAAAGCGucgacgcGAGACCGCg -3'
miRNA:   3'- aaGCU---GCC-GCGuUUUCGC-------CUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 43825 0.67 0.969763
Target:  5'- -gCGugGcGCGCAaccugcgguuauaaaGAAGgGGGcuGCCGCg -3'
miRNA:   3'- aaGCugC-CGCGU---------------UUUCgCCUu-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 67343 0.67 0.968542
Target:  5'- aUCGcCGcCGCGAAgagGGCGGAAAacguagcgcCCGCg -3'
miRNA:   3'- aAGCuGCcGCGUUU---UCGCCUUU---------GGCG- -5'
24397 3' -52.8 NC_005264.1 + 119113 0.67 0.968542
Target:  5'- cUCGcacuuauCGGCGCAc--GCGG--GCCGCu -3'
miRNA:   3'- aAGCu------GCCGCGUuuuCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 149456 0.67 0.968542
Target:  5'- -nCGGCGGa--GGAGGUcucggGGGAGCCGCg -3'
miRNA:   3'- aaGCUGCCgcgUUUUCG-----CCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 130810 0.67 0.968542
Target:  5'- cUCGcacucCGGgGCAgcccGAGGCGGuu-CCGCa -3'
miRNA:   3'- aAGCu----GCCgCGU----UUUCGCCuuuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.