miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 18010 0.68 0.945888
Target:  5'- -cUGACGGCG-----GCGGGucGGCCGCg -3'
miRNA:   3'- aaGCUGCCGCguuuuCGCCU--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 18055 0.66 0.97688
Target:  5'- -gCGGCGGCGCcgcGAGCcaGGGCgCGCg -3'
miRNA:   3'- aaGCUGCCGCGuu-UUCGccUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 18545 0.68 0.941279
Target:  5'- -cUGAgGGCGCGccggcgucagucGGAGCGGcauCCGCc -3'
miRNA:   3'- aaGCUgCCGCGU------------UUUCGCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 18587 0.68 0.925965
Target:  5'- cUCGGuguCGGUGCGGuagcAGcCGGAgaaGACCGCa -3'
miRNA:   3'- aAGCU---GCCGCGUUu---UC-GCCU---UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 20146 0.66 0.97688
Target:  5'- -gCGAUGGCGCGccgccGGCGcccaAGAUCGCg -3'
miRNA:   3'- aaGCUGCCGCGUuu---UCGCc---UUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 20259 0.69 0.895473
Target:  5'- gUUG-CGGCGCGGccucGCGGAgggGACCGUc -3'
miRNA:   3'- aAGCuGCCGCGUUuu--CGCCU---UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 20326 0.69 0.920362
Target:  5'- aUCGugGGCaccgGCA--AGCaGGAAACgCGCc -3'
miRNA:   3'- aAGCugCCG----CGUuuUCG-CCUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 20446 0.71 0.851057
Target:  5'- -aUGugGGCGUAGccGGCGGAcAGCgGCg -3'
miRNA:   3'- aaGCugCCGCGUUu-UCGCCU-UUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 21247 0.66 0.97688
Target:  5'- -aCGACGGCuCGAGuguGCGc--GCCGCg -3'
miRNA:   3'- aaGCUGCCGcGUUUu--CGCcuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 21572 0.68 0.940805
Target:  5'- -aCGcCGGCGcCGAGAccGUGGAAaggguguGCCGCg -3'
miRNA:   3'- aaGCuGCCGC-GUUUU--CGCCUU-------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 21901 0.74 0.691013
Target:  5'- aUUCGGCGGCGCGu--GCGGucguaguGCUGUc -3'
miRNA:   3'- -AAGCUGCCGCGUuuuCGCCuu-----UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 21986 0.67 0.961915
Target:  5'- gUCGGCcuGGCGCA--AGCGaAAGgCGCg -3'
miRNA:   3'- aAGCUG--CCGCGUuuUCGCcUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 22205 0.66 0.974305
Target:  5'- -gUGGCGuGCGCGGcAAGUGGAGucgUCGCc -3'
miRNA:   3'- aaGCUGC-CGCGUU-UUCGCCUUu--GGCG- -5'
24397 3' -52.8 NC_005264.1 + 23751 0.66 0.981453
Target:  5'- gUCG-CGGUGCAGAccuuagaccaAGUuugGGGAACgGCg -3'
miRNA:   3'- aAGCuGCCGCGUUU----------UCG---CCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 24310 0.68 0.936423
Target:  5'- aUCcACGGUGCc-GAGCGuugaaGggGCCGCa -3'
miRNA:   3'- aAGcUGCCGCGuuUUCGC-----CuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 25628 0.69 0.908409
Target:  5'- -aCGGCGGCGguGGGGCcgcgcuCCGCg -3'
miRNA:   3'- aaGCUGCCGCguUUUCGccuuu-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 25653 0.67 0.961915
Target:  5'- --aGAUGGUGUAcguGAgcAGCGGAacGAUCGCg -3'
miRNA:   3'- aagCUGCCGCGU---UU--UCGCCU--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 27181 0.71 0.834528
Target:  5'- -aCGGCGGCGCAua---GGAAcuuuCCGCa -3'
miRNA:   3'- aaGCUGCCGCGUuuucgCCUUu---GGCG- -5'
24397 3' -52.8 NC_005264.1 + 28336 0.73 0.731764
Target:  5'- -gCGGCGGCGUAcggguAGCGGGcGACaCGCg -3'
miRNA:   3'- aaGCUGCCGCGUuu---UCGCCU-UUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 28956 0.67 0.953165
Target:  5'- -cCGugGGUGaacgccaagacucuGAGCGcGGAGCCGCu -3'
miRNA:   3'- aaGCugCCGCguu-----------UUCGC-CUUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.