miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 29241 0.71 0.851057
Target:  5'- gUCGA-GGaGCAc-AGCGGAGACUGCg -3'
miRNA:   3'- aAGCUgCCgCGUuuUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 29628 0.67 0.953165
Target:  5'- cUCuACGGCGCGGAcgaacgaggcccgcAGuCGGuccGCCGCg -3'
miRNA:   3'- aAGcUGCCGCGUUU--------------UC-GCCuu-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 30393 0.71 0.813684
Target:  5'- cUCGGCGGCgGCGGucgcgcgccgguGCGGAGAgCUGCg -3'
miRNA:   3'- aAGCUGCCG-CGUUuu----------CGCCUUU-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 30429 0.67 0.968542
Target:  5'- -nCGGCGGa--GGAGGUcucggGGGAGCCGCg -3'
miRNA:   3'- aaGCUGCCgcgUUUUCG-----CCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 30614 0.67 0.96534
Target:  5'- -gCGACGGCgGCGGcgaCGGAu-CCGCg -3'
miRNA:   3'- aaGCUGCCG-CGUUuucGCCUuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 31028 0.71 0.851057
Target:  5'- -gCGACGGUGCcgccuAGCGGucgugcGGCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuuu--UCGCCu-----UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 31509 0.66 0.981453
Target:  5'- gUCaGGCGGCuccagGCucGGGCGGGgagGGCCGUu -3'
miRNA:   3'- aAG-CUGCCG-----CGuuUUCGCCU---UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 32248 0.66 0.97688
Target:  5'- -aUGACGGCGUucauGAuGUGGAAgggaGCCGa -3'
miRNA:   3'- aaGCUGCCGCGu---UUuCGCCUU----UGGCg -5'
24397 3' -52.8 NC_005264.1 + 32690 0.66 0.976631
Target:  5'- -gUGGCGGC-CAGGcuuuuAGCGGGggugaggugucauAACCGCu -3'
miRNA:   3'- aaGCUGCCGcGUUU-----UCGCCU-------------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 32793 0.68 0.945888
Target:  5'- -gCGACGGUcuggccGCAAccaucaucGCGGAAGCCuGCg -3'
miRNA:   3'- aaGCUGCCG------CGUUuu------CGCCUUUGG-CG- -5'
24397 3' -52.8 NC_005264.1 + 32915 0.74 0.691013
Target:  5'- cUCGAUcGCGCAGGGgucGCGGGGcGCCGCg -3'
miRNA:   3'- aAGCUGcCGCGUUUU---CGCCUU-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 33076 0.68 0.931319
Target:  5'- gUCG-CGGUGCccGGGGCGGAuuUCGUg -3'
miRNA:   3'- aAGCuGCCGCGu-UUUCGCCUuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 33262 0.67 0.96156
Target:  5'- -gCGGCGaacGCGCGAuccgcgccccugaGGGCGGc-GCCGCa -3'
miRNA:   3'- aaGCUGC---CGCGUU-------------UUCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 33651 0.66 0.97124
Target:  5'- gUCGACGGUGCu--AGCcgacccaGGuAACCGg -3'
miRNA:   3'- aAGCUGCCGCGuuuUCG-------CCuUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 34051 0.71 0.84944
Target:  5'- -aCGGCaGCGUuaucccguuGUGGAAGCCGCg -3'
miRNA:   3'- aaGCUGcCGCGuuuu-----CGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 34112 0.71 0.851057
Target:  5'- cUCaGCGGCGCGAAacagcgucgaGGCGcGAGcCCGCc -3'
miRNA:   3'- aAGcUGCCGCGUUU----------UCGC-CUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 34508 0.66 0.97688
Target:  5'- aUCGAC-GCGCAAguAAGCaGGAugCGg -3'
miRNA:   3'- aAGCUGcCGCGUU--UUCGcCUUugGCg -5'
24397 3' -52.8 NC_005264.1 + 35006 0.66 0.97926
Target:  5'- -gCGAgCGGCGCucgaagAGGAGCGcuGGCCGUc -3'
miRNA:   3'- aaGCU-GCCGCG------UUUUCGCcuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 35499 0.67 0.951931
Target:  5'- -gCGACGGCuugguaucgcuggacGUGAAAGUGGgcGCgGCg -3'
miRNA:   3'- aaGCUGCCG---------------CGUUUUCGCCuuUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 35769 0.77 0.535481
Target:  5'- -aCGugGGUGaAGAGGCGGAGGgCGCg -3'
miRNA:   3'- aaGCugCCGCgUUUUCGCCUUUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.