miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 35984 0.66 0.974305
Target:  5'- --aGGgGGCGCgGAGAGC-GAAACgCGCa -3'
miRNA:   3'- aagCUgCCGCG-UUUUCGcCUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 36177 0.66 0.980159
Target:  5'- --aGGCGGCGUuucgugguugggcgaAAGAGC--AGACCGCa -3'
miRNA:   3'- aagCUGCCGCG---------------UUUUCGccUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36245 0.67 0.96534
Target:  5'- --gGGCGGagccgcacgugGCGGAAGCGGGuaGGCCGUc -3'
miRNA:   3'- aagCUGCCg----------CGUUUUCGCCU--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36543 0.75 0.607635
Target:  5'- aUCGGCcGCGCGcccgAAAGCGGcauGGCCGCc -3'
miRNA:   3'- aAGCUGcCGCGU----UUUCGCCu--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36672 0.76 0.554832
Target:  5'- -gCGGCugcgccauacucuGGCGCAAuGGCGGAuucuGCCGCg -3'
miRNA:   3'- aaGCUG-------------CCGCGUUuUCGCCUu---UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36699 0.69 0.914509
Target:  5'- gUCGGcCGGCGCuaacGGCgcguuGGAAACCGa -3'
miRNA:   3'- aAGCU-GCCGCGuuu-UCG-----CCUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 36751 0.69 0.895473
Target:  5'- -gCGACGGCGCcGGccGGCGccgucGCCGCu -3'
miRNA:   3'- aaGCUGCCGCGuUU--UCGCcuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36812 0.67 0.96534
Target:  5'- cUCuGCGGCGCA--GGCGaGgcGCgGCg -3'
miRNA:   3'- aAGcUGCCGCGUuuUCGC-CuuUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 37573 0.72 0.799231
Target:  5'- -gCGACGGaggcgGCAAGucucGCGGcgGCCGCg -3'
miRNA:   3'- aaGCUGCCg----CGUUUu---CGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 37788 0.66 0.974305
Target:  5'- cUCGA-GGCGagc-GGCGGAGaagaggcgcGCCGCc -3'
miRNA:   3'- aAGCUgCCGCguuuUCGCCUU---------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 38289 0.69 0.918632
Target:  5'- -aCGGCGGCGaCGuucguuacgccuucGCGGAGGCCGa -3'
miRNA:   3'- aaGCUGCCGC-GUuuu-----------CGCCUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 38364 0.66 0.980597
Target:  5'- --gGGCGGUuaggaccuccuccgGCGAGAGCGGcGAcgccgagacagauGCCGCg -3'
miRNA:   3'- aagCUGCCG--------------CGUUUUCGCC-UU-------------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 39091 0.66 0.971529
Target:  5'- cUCGGCGG-GCAGcGGCgucuGGAccAGCUGCu -3'
miRNA:   3'- aAGCUGCCgCGUUuUCG----CCU--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 39218 0.68 0.931319
Target:  5'- -cCGccGCGGCGCu--GGCGGGgagGGCCuGCg -3'
miRNA:   3'- aaGC--UGCCGCGuuuUCGCCU---UUGG-CG- -5'
24397 3' -52.8 NC_005264.1 + 40784 0.68 0.931319
Target:  5'- -aCGcaGCGGCGCugcaaacuGCGGggGgCGCu -3'
miRNA:   3'- aaGC--UGCCGCGuuuu----CGCCuuUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 40784 0.82 0.278777
Target:  5'- cUUCcGCGGCGcCGAGAGCGGA-GCCGCu -3'
miRNA:   3'- -AAGcUGCCGC-GUUUUCGCCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 40917 0.7 0.866757
Target:  5'- cUUCGGCGGCGCGGGcuAGCuucuGAAcagacCCGCa -3'
miRNA:   3'- -AAGCUGCCGCGUUU--UCGc---CUUu----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 40972 0.71 0.84944
Target:  5'- -gCGACGGCGCGAgcGCGaccggcccuCCGCc -3'
miRNA:   3'- aaGCUGCCGCGUUuuCGCcuuu-----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 41669 0.67 0.950253
Target:  5'- --gGACGuGCGCAucAGUGcGGACCGUa -3'
miRNA:   3'- aagCUGC-CGCGUuuUCGCcUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 42058 0.68 0.941279
Target:  5'- aUCGcguugcccGCGGCGCGu-GGCGucAGCUGCg -3'
miRNA:   3'- aAGC--------UGCCGCGUuuUCGCcuUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.