miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 154795 0.77 0.535481
Target:  5'- -aCGugGGUGaAGAGGCGGAGGgCGCg -3'
miRNA:   3'- aaGCugCCGCgUUUUCGCCUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 154416 0.75 0.607635
Target:  5'- -aCGAUGGCGaCAAAGgcacaugcGCGGAAACgGCg -3'
miRNA:   3'- aaGCUGCCGC-GUUUU--------CGCCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 154033 0.66 0.97926
Target:  5'- -gCGAgCGGCGCucgaagAGGAGCGcuGGCCGUc -3'
miRNA:   3'- aaGCU-GCCGCG------UUUUCGCcuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 153535 0.66 0.97688
Target:  5'- aUCGAC-GCGCAAguAAGCaGGAugCGg -3'
miRNA:   3'- aAGCUGcCGCGUU--UUCGcCUUugGCg -5'
24397 3' -52.8 NC_005264.1 + 153507 0.66 0.97926
Target:  5'- -aCGGCGGcCGCcccuGGCGGGGACg-- -3'
miRNA:   3'- aaGCUGCC-GCGuuu-UCGCCUUUGgcg -5'
24397 3' -52.8 NC_005264.1 + 153373 0.71 0.842892
Target:  5'- --aGAC-GCGCGAagcguugcgcGAGgGGAAACCGCu -3'
miRNA:   3'- aagCUGcCGCGUU----------UUCgCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 153139 0.71 0.851057
Target:  5'- cUCaGCGGCGCGAAacagcgucgaGGCGcGAGcCCGCc -3'
miRNA:   3'- aAGcUGCCGCGUUU----------UCGC-CUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 152745 0.66 0.981453
Target:  5'- -aCGgacACGGcCGCGAugcccccGGCGGGAgauuccGCCGCg -3'
miRNA:   3'- aaGC---UGCC-GCGUUu------UCGCCUU------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 152565 0.66 0.971529
Target:  5'- uUUCGACaGGCGCGAAGaaucuaaguGCGaaccucuaguGAAGCaCGCg -3'
miRNA:   3'- -AAGCUG-CCGCGUUUU---------CGC----------CUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 152289 0.67 0.96156
Target:  5'- -gCGGCGaacGCGCGAuccgcgccccugaGGGCGGc-GCCGCa -3'
miRNA:   3'- aaGCUGC---CGCGUU-------------UUCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 151752 0.66 0.976631
Target:  5'- cUCGACGcCGCAgcaucguaauuacGAGGCGGGuacuugccCCGCc -3'
miRNA:   3'- aAGCUGCcGCGU-------------UUUCGCCUuu------GGCG- -5'
24397 3' -52.8 NC_005264.1 + 150536 0.66 0.981453
Target:  5'- gUCaGGCGGCuccagGCucGGGCGGGgagGGCCGUu -3'
miRNA:   3'- aAG-CUGCCG-----CGuuUUCGCCU---UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 150055 0.71 0.851057
Target:  5'- -gCGACGGUGCcgccuAGCGGucgugcGGCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuuu--UCGCCu-----UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 149641 0.67 0.96534
Target:  5'- -gCGACGGCgGCGGcgaCGGAu-CCGCg -3'
miRNA:   3'- aaGCUGCCG-CGUUuucGCCUuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 149456 0.67 0.968542
Target:  5'- -nCGGCGGa--GGAGGUcucggGGGAGCCGCg -3'
miRNA:   3'- aaGCUGCCgcgUUUUCG-----CCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 149420 0.71 0.813684
Target:  5'- cUCGGCGGCgGCGGucgcgcgccgguGCGGAGAgCUGCg -3'
miRNA:   3'- aAGCUGCCG-CGUUuu----------CGCCUUU-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 148256 0.68 0.935924
Target:  5'- -gCGGCGGCGUuucacgggacAGAuuugcccGGCGGGagauucuggaGACCGCg -3'
miRNA:   3'- aaGCUGCCGCG----------UUU-------UCGCCU----------UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 147554 0.66 0.971529
Target:  5'- -cCG-CGGCGCGAA-GUGGccGCCGa -3'
miRNA:   3'- aaGCuGCCGCGUUUuCGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 147147 0.66 0.974305
Target:  5'- cUCGACGGCGUucuguGCGaGGAGCa-- -3'
miRNA:   3'- aAGCUGCCGCGuuuu-CGC-CUUUGgcg -5'
24397 3' -52.8 NC_005264.1 + 146940 0.79 0.42024
Target:  5'- gUUCG-UGGCGCAGAGGCuGGAuggcgcugaGGCCGCa -3'
miRNA:   3'- -AAGCuGCCGCGUUUUCG-CCU---------UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.