miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 146672 0.66 0.971529
Target:  5'- -cCGACcuccGCGC-AGGGCGGcauuGCCGCc -3'
miRNA:   3'- aaGCUGc---CGCGuUUUCGCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 145972 0.66 0.97688
Target:  5'- cUUCGcCGGCGCGAAuacgaacugcGCGGcgGCUGg -3'
miRNA:   3'- -AAGCuGCCGCGUUUu---------CGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 144408 0.66 0.97926
Target:  5'- cUUCGACcccGCGCc-GAGCGaGAGGgCGCg -3'
miRNA:   3'- -AAGCUGc--CGCGuuUUCGC-CUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 144302 0.7 0.881578
Target:  5'- -aCGcCGGCGCGcccucAGGgGGAGACgGCg -3'
miRNA:   3'- aaGCuGCCGCGUu----UUCgCCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 143090 0.67 0.950253
Target:  5'- aUCG-CGGCGCGAu-GCuGGggGCacgGCg -3'
miRNA:   3'- aAGCuGCCGCGUUuuCG-CCuuUGg--CG- -5'
24397 3' -52.8 NC_005264.1 + 142976 0.66 0.976128
Target:  5'- -gCGGCGGUcucucgggcaugagGCGGgcGUGGGGACcCGCa -3'
miRNA:   3'- aaGCUGCCG--------------CGUUuuCGCCUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 142770 0.68 0.938395
Target:  5'- -cUGACGGUGCuugcucgcuacGCGG-GGCCGCg -3'
miRNA:   3'- aaGCUGCCGCGuuuu-------CGCCuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 141085 0.67 0.961915
Target:  5'- ---uACGGCGCucAAGaCGGccGCCGCc -3'
miRNA:   3'- aagcUGCCGCGuuUUC-GCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 140785 0.68 0.930795
Target:  5'- -gCGGCGGCGCuaccguccAAGGCGucggucuGAAGCCGa -3'
miRNA:   3'- aaGCUGCCGCGu-------UUUCGC-------CUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 139447 0.68 0.931319
Target:  5'- gUCGGCGGCGguAuaacucguucGCGaGAGAUUGCg -3'
miRNA:   3'- aAGCUGCCGCguUuu--------CGC-CUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 138995 0.72 0.761415
Target:  5'- gUCG-UGGCuacagacaGCGAuAGCGGGAGCUGCg -3'
miRNA:   3'- aAGCuGCCG--------CGUUuUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 138910 0.66 0.97926
Target:  5'- -cCGGCGGCGCGAcca---GAACCGCc -3'
miRNA:   3'- aaGCUGCCGCGUUuucgccUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 137445 0.73 0.71153
Target:  5'- -cUGGCGGUGCuccuGaCGGAAACCGUg -3'
miRNA:   3'- aaGCUGCCGCGuuuuC-GCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 136572 0.69 0.908409
Target:  5'- cUCGGUGGCGUcgAAGAGCGGGucguagagagGGCCGa -3'
miRNA:   3'- aAGCUGCCGCG--UUUUCGCCU----------UUGGCg -5'
24397 3' -52.8 NC_005264.1 + 136438 0.7 0.859014
Target:  5'- --aGGCGGaagaGCAugGGCGcuGAGGCCGCg -3'
miRNA:   3'- aagCUGCCg---CGUuuUCGC--CUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 136334 0.72 0.761415
Target:  5'- -cCGccGCGGCGUAGAAGCuGGuucggcGCCGCa -3'
miRNA:   3'- aaGC--UGCCGCGUUUUCG-CCuu----UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 136011 0.67 0.968542
Target:  5'- gUUCaGAuauCGGUGCuaguuauGGCaGGAAGCCGCu -3'
miRNA:   3'- -AAG-CU---GCCGCGuuu----UCG-CCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 135157 0.67 0.961915
Target:  5'- gUCGGCGaG-GCAGAGGCc--AGCCGCg -3'
miRNA:   3'- aAGCUGC-CgCGUUUUCGccuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 134983 0.88 0.126623
Target:  5'- -gCGGCGGCGCAuuGGGCGGAuGCCGCc -3'
miRNA:   3'- aaGCUGCCGCGUu-UUCGCCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 133394 0.67 0.968542
Target:  5'- -gCGGCGGCGCAGcccguuGGUGGccccaAAGCCuacGCg -3'
miRNA:   3'- aaGCUGCCGCGUUu-----UCGCC-----UUUGG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.