miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 133320 0.66 0.971529
Target:  5'- --aGACGGUgGCGAGauGGCGGGucuuUCGCa -3'
miRNA:   3'- aagCUGCCG-CGUUU--UCGCCUuu--GGCG- -5'
24397 3' -52.8 NC_005264.1 + 133277 0.68 0.945438
Target:  5'- -gCGACGGgGCuggcgauaaacaaAAGGGCGGugacGCUGCg -3'
miRNA:   3'- aaGCUGCCgCG-------------UUUUCGCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 132589 0.68 0.945888
Target:  5'- ---aGCGGCGCG--GGCGG-GACCGg -3'
miRNA:   3'- aagcUGCCGCGUuuUCGCCuUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 132479 0.71 0.825971
Target:  5'- -gCGGCGGCGCcGAAGgGGcucCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuUUUCgCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 132010 0.74 0.705401
Target:  5'- -aCGACGaCGCGagcccguucgagcacGAGGCGGAAACCGa -3'
miRNA:   3'- aaGCUGCcGCGU---------------UUUCGCCUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 131615 0.66 0.977855
Target:  5'- -gCGugGGCGCGc--GCGGAGAagaacagauggucaCGCc -3'
miRNA:   3'- aaGCugCCGCGUuuuCGCCUUUg-------------GCG- -5'
24397 3' -52.8 NC_005264.1 + 130852 0.7 0.881578
Target:  5'- aUCGAUGGCGCuguAGCGcGcaucGGACaCGCg -3'
miRNA:   3'- aAGCUGCCGCGuuuUCGC-C----UUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 130810 0.67 0.968542
Target:  5'- cUCGcacucCGGgGCAgcccGAGGCGGuu-CCGCa -3'
miRNA:   3'- aAGCu----GCCgCGU----UUUCGCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 130251 0.7 0.865993
Target:  5'- uUUCGAaccuuuugGGCGCGGGugcgcgacguugcGGCGGcuACCGCg -3'
miRNA:   3'- -AAGCUg-------CCGCGUUU-------------UCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 130016 0.67 0.96534
Target:  5'- gUCGGuccCGaGCGCuucAGUGGAAuCCGCa -3'
miRNA:   3'- aAGCU---GC-CGCGuuuUCGCCUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 129857 0.66 0.974305
Target:  5'- -cCGAUGGCGauau-GCGcGAGcCCGCg -3'
miRNA:   3'- aaGCUGCCGCguuuuCGC-CUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 129497 0.75 0.597211
Target:  5'- -gCGGCGGCGCAGGguuuGGCGGc-GCCGg -3'
miRNA:   3'- aaGCUGCCGCGUUU----UCGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 128570 0.72 0.78999
Target:  5'- -gCGGCGgaGCGCAGcacGCGGAuuACCGCg -3'
miRNA:   3'- aaGCUGC--CGCGUUuu-CGCCUu-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 127324 0.66 0.971529
Target:  5'- -cCGugGGCGaCGGGGGCaccugcGCCGCg -3'
miRNA:   3'- aaGCugCCGC-GUUUUCGccuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 127248 0.66 0.97688
Target:  5'- -aCG-CGGC-CAucGGCcGAAGCCGCa -3'
miRNA:   3'- aaGCuGCCGcGUuuUCGcCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 127057 0.67 0.950253
Target:  5'- -aCGACGGCGCcAccGCGcccuCCGCc -3'
miRNA:   3'- aaGCUGCCGCGuUuuCGCcuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 126455 0.7 0.866757
Target:  5'- --aGAUGGCGCcuAGcGCGGAGAuacuccCCGCg -3'
miRNA:   3'- aagCUGCCGCGuuUU-CGCCUUU------GGCG- -5'
24397 3' -52.8 NC_005264.1 + 126272 0.66 0.97688
Target:  5'- -gCGuguUGGUccGCGGAGGCGGccauGCCGCu -3'
miRNA:   3'- aaGCu--GCCG--CGUUUUCGCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 126088 0.67 0.950253
Target:  5'- -gCGACGGCGCc--GGCcGgcGCCGUc -3'
miRNA:   3'- aaGCUGCCGCGuuuUCGcCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 125491 0.78 0.447704
Target:  5'- cUCGGCGGCGCGgcGAAcGuCGGGGugCGCg -3'
miRNA:   3'- aAGCUGCCGCGU--UUU-C-GCCUUugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.