miRNA display CGI


Results 1 - 20 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 56925 0.72 0.770113
Target:  5'- --aGAUGGCGUAGAgggggcaAGCGGAGAC-GCa -3'
miRNA:   3'- aagCUGCCGCGUUU-------UCGCCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 6872 0.74 0.659878
Target:  5'- -cCGACGGCaGCcAGAGCGuccgcGAGCCGCg -3'
miRNA:   3'- aaGCUGCCG-CGuUUUCGCc----UUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 67202 0.74 0.659878
Target:  5'- -aCG-CGGCGCcuauAGUGGGAACCGUc -3'
miRNA:   3'- aaGCuGCCGCGuuu-UCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 32915 0.74 0.691013
Target:  5'- cUCGAUcGCGCAGGGgucGCGGGGcGCCGCg -3'
miRNA:   3'- aAGCUGcCGCGUUUU---CGCCUU-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 132010 0.74 0.705401
Target:  5'- -aCGACGaCGCGagcccguucgagcacGAGGCGGAAACCGa -3'
miRNA:   3'- aaGCUGCcGCGU---------------UUUCGCCUUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 137445 0.73 0.71153
Target:  5'- -cUGGCGGUGCuccuGaCGGAAACCGUg -3'
miRNA:   3'- aaGCUGCCGCGuuuuC-GCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 28336 0.73 0.731764
Target:  5'- -gCGGCGGCGUAcggguAGCGGGcGACaCGCg -3'
miRNA:   3'- aaGCUGCCGCGUuu---UCGCCU-UUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 50555 0.73 0.731764
Target:  5'- gUCGAagcuaGGCGCGcgcguGCGGGAAgCGCa -3'
miRNA:   3'- aAGCUg----CCGCGUuuu--CGCCUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 138995 0.72 0.761415
Target:  5'- gUCG-UGGCuacagacaGCGAuAGCGGGAGCUGCg -3'
miRNA:   3'- aAGCuGCCG--------CGUUuUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 56822 0.74 0.657792
Target:  5'- gUCGGCGGCGCAugaucaucguuuGAGuCGGuaucGCCGCc -3'
miRNA:   3'- aAGCUGCCGCGUu-----------UUC-GCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 55169 0.75 0.618078
Target:  5'- -gCGGCcucugGGCGCGgcugAAGGCGGcGACCGCg -3'
miRNA:   3'- aaGCUG-----CCGCGU----UUUCGCCuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36543 0.75 0.607635
Target:  5'- aUCGGCcGCGCGcccgAAAGCGGcauGGCCGCc -3'
miRNA:   3'- aAGCUGcCGCGU----UUUCGCCu--UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 15467 0.8 0.368502
Target:  5'- -gCGACGaCGCGAAAGCGGcGAUCGCg -3'
miRNA:   3'- aaGCUGCcGCGUUUUCGCCuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 125491 0.78 0.447704
Target:  5'- cUCGGCGGCGCGgcGAAcGuCGGGGugCGCg -3'
miRNA:   3'- aAGCUGCCGCGU--UUU-C-GCCUUugGCG- -5'
24397 3' -52.8 NC_005264.1 + 121424 0.78 0.451441
Target:  5'- --gGAgccCGGCGCcggccugccuaggaaGAAAGCGGAGGCCGCg -3'
miRNA:   3'- aagCU---GCCGCG---------------UUUUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 80171 0.77 0.52539
Target:  5'- -cCGGgcuCGGCGCGAAGGCGGAAugCa- -3'
miRNA:   3'- aaGCU---GCCGCGUUUUCGCCUUugGcg -5'
24397 3' -52.8 NC_005264.1 + 50154 0.77 0.535481
Target:  5'- -gCGAUGGCGCAcgAGGGCGu--GCCGCa -3'
miRNA:   3'- aaGCUGCCGCGU--UUUCGCcuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 154795 0.77 0.535481
Target:  5'- -aCGugGGUGaAGAGGCGGAGGgCGCg -3'
miRNA:   3'- aaGCugCCGCgUUUUCGCCUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 36672 0.76 0.554832
Target:  5'- -gCGGCugcgccauacucuGGCGCAAuGGCGGAuucuGCCGCg -3'
miRNA:   3'- aaGCUG-------------CCGCGUUuUCGCCUu---UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 104413 0.76 0.56613
Target:  5'- -aCGACGaCGCAGAGcUGGAAGCCGCc -3'
miRNA:   3'- aaGCUGCcGCGUUUUcGCCUUUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.