Results 61 - 80 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24397 | 3' | -52.8 | NC_005264.1 | + | 138995 | 0.72 | 0.761415 |
Target: 5'- gUCG-UGGCuacagacaGCGAuAGCGGGAGCUGCg -3' miRNA: 3'- aAGCuGCCG--------CGUUuUCGCCUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 56925 | 0.72 | 0.770113 |
Target: 5'- --aGAUGGCGUAGAgggggcaAGCGGAGAC-GCa -3' miRNA: 3'- aagCUGCCGCGUUU-------UCGCCUUUGgCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 34051 | 0.71 | 0.84944 |
Target: 5'- -aCGGCaGCGUuaucccguuGUGGAAGCCGCg -3' miRNA: 3'- aaGCUGcCGCGuuuu-----CGCCUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 159999 | 0.71 | 0.84944 |
Target: 5'- -gCGACGGCGCGAgcGCGaccggcccuCCGCc -3' miRNA: 3'- aaGCUGCCGCGUUuuCGCcuuu-----GGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 4459 | 0.71 | 0.850249 |
Target: 5'- -aCGGCucccauaGGCGaggcuAAGCGGAAACCGUc -3' miRNA: 3'- aaGCUG-------CCGCguu--UUCGCCUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 77707 | 0.71 | 0.851057 |
Target: 5'- cUC-ACGGCGCAGGAGUuccaagaaccGGAgGACUGCg -3' miRNA: 3'- aAGcUGCCGCGUUUUCG----------CCU-UUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 150055 | 0.71 | 0.851057 |
Target: 5'- -gCGACGGUGCcgccuAGCGGucgugcGGCUGCg -3' miRNA: 3'- aaGCUGCCGCGuuu--UCGCCu-----UUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 20446 | 0.71 | 0.851057 |
Target: 5'- -aUGugGGCGUAGccGGCGGAcAGCgGCg -3' miRNA: 3'- aaGCugCCGCGUUu-UCGCCU-UUGgCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 153139 | 0.71 | 0.851057 |
Target: 5'- cUCaGCGGCGCGAAacagcgucgaGGCGcGAGcCCGCc -3' miRNA: 3'- aAGcUGCCGCGUUU----------UCGC-CUUuGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 136438 | 0.7 | 0.859014 |
Target: 5'- --aGGCGGaagaGCAugGGCGcuGAGGCCGCg -3' miRNA: 3'- aagCUGCCg---CGUuuUCGC--CUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 16566 | 0.71 | 0.834528 |
Target: 5'- gUgGGCGGCGCcGGGGCGGcgG-CGCa -3' miRNA: 3'- aAgCUGCCGCGuUUUCGCCuuUgGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 27181 | 0.71 | 0.834528 |
Target: 5'- -aCGGCGGCGCAua---GGAAcuuuCCGCa -3' miRNA: 3'- aaGCUGCCGCGUuuucgCCUUu---GGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 82363 | 0.72 | 0.779654 |
Target: 5'- cUUGGCGGCGa---AGCGGAGcacuucgcacaccACCGCu -3' miRNA: 3'- aAGCUGCCGCguuuUCGCCUU-------------UGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 5190 | 0.72 | 0.780601 |
Target: 5'- cUCG-CGGC-CGAAAcuuCGGAAGCCGCg -3' miRNA: 3'- aAGCuGCCGcGUUUUc--GCCUUUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 112597 | 0.72 | 0.789058 |
Target: 5'- -gCGGCaGGUGCAcaaacugGGAGCGGGGcCCGCc -3' miRNA: 3'- aaGCUG-CCGCGU-------UUUCGCCUUuGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 70705 | 0.72 | 0.78999 |
Target: 5'- -gCGACaGCGCGAAGaCGGAGACUGg -3' miRNA: 3'- aaGCUGcCGCGUUUUcGCCUUUGGCg -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 156600 | 0.72 | 0.799231 |
Target: 5'- -gCGACGGaggcgGCAAGucucGCGGcgGCCGCg -3' miRNA: 3'- aaGCUGCCg----CGUUUu---CGCCuuUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 107210 | 0.71 | 0.809213 |
Target: 5'- -gCGGCGGCGCGc--GCGGuuggcauucggcgccAGCCGCg -3' miRNA: 3'- aaGCUGCCGCGUuuuCGCCu--------------UUGGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 149420 | 0.71 | 0.813684 |
Target: 5'- cUCGGCGGCgGCGGucgcgcgccgguGCGGAGAgCUGCg -3' miRNA: 3'- aAGCUGCCG-CGUUuu----------CGCCUUU-GGCG- -5' |
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24397 | 3' | -52.8 | NC_005264.1 | + | 132479 | 0.71 | 0.825971 |
Target: 5'- -gCGGCGGCGCcGAAGgGGcucCUGCg -3' miRNA: 3'- aaGCUGCCGCGuUUUCgCCuuuGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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