miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 40917 0.7 0.866757
Target:  5'- cUUCGGCGGCGCGGGcuAGCuucuGAAcagacCCGCa -3'
miRNA:   3'- -AAGCUGCCGCGUUU--UCGc---CUUu----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 68022 0.7 0.881578
Target:  5'- -gCGGa-GCGCcaAAGAGCGGAuAACCGCu -3'
miRNA:   3'- aaGCUgcCGCG--UUUUCGCCU-UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 130852 0.7 0.881578
Target:  5'- aUCGAUGGCGCuguAGCGcGcaucGGACaCGCg -3'
miRNA:   3'- aAGCUGCCGCGuuuUCGC-C----UUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 71848 0.7 0.888643
Target:  5'- -aCGACGcGuCGCGGcGGCGGuguuCCGCg -3'
miRNA:   3'- aaGCUGC-C-GCGUUuUCGCCuuu-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 98670 0.7 0.888643
Target:  5'- -gUGuCGGCGCu--AGCuuagaGGGAGCCGCu -3'
miRNA:   3'- aaGCuGCCGCGuuuUCG-----CCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 155777 0.69 0.895473
Target:  5'- -gCGACGGCGCcGGccGGCGccgucGCCGCu -3'
miRNA:   3'- aaGCUGCCGCGuUU--UCGCcuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 20259 0.69 0.895473
Target:  5'- gUUG-CGGCGCGGccucGCGGAgggGACCGUc -3'
miRNA:   3'- aAGCuGCCGCGUUuu--CGCCU---UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 136438 0.7 0.859014
Target:  5'- --aGGCGGaagaGCAugGGCGcuGAGGCCGCg -3'
miRNA:   3'- aagCUGCCg---CGUuuUCGC--CUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 153139 0.71 0.851057
Target:  5'- cUCaGCGGCGCGAAacagcgucgaGGCGcGAGcCCGCc -3'
miRNA:   3'- aAGcUGCCGCGUUU----------UCGC-CUUuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 20446 0.71 0.851057
Target:  5'- -aUGugGGCGUAGccGGCGGAcAGCgGCg -3'
miRNA:   3'- aaGCugCCGCGUUu-UCGCCU-UUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 149420 0.71 0.813684
Target:  5'- cUCGGCGGCgGCGGucgcgcgccgguGCGGAGAgCUGCg -3'
miRNA:   3'- aAGCUGCCG-CGUUuu----------CGCCUUU-GGCG- -5'
24397 3' -52.8 NC_005264.1 + 132479 0.71 0.825971
Target:  5'- -gCGGCGGCGCcGAAGgGGcucCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuUUUCgCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 27181 0.71 0.834528
Target:  5'- -aCGGCGGCGCAua---GGAAcuuuCCGCa -3'
miRNA:   3'- aaGCUGCCGCGUuuucgCCUUu---GGCG- -5'
24397 3' -52.8 NC_005264.1 + 16566 0.71 0.834528
Target:  5'- gUgGGCGGCGCcGGGGCGGcgG-CGCa -3'
miRNA:   3'- aAgCUGCCGCGuUUUCGCCuuUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 34051 0.71 0.84944
Target:  5'- -aCGGCaGCGUuaucccguuGUGGAAGCCGCg -3'
miRNA:   3'- aaGCUGcCGCGuuuu-----CGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 159999 0.71 0.84944
Target:  5'- -gCGACGGCGCGAgcGCGaccggcccuCCGCc -3'
miRNA:   3'- aaGCUGCCGCGUUuuCGCcuuu-----GGCG- -5'
24397 3' -52.8 NC_005264.1 + 4459 0.71 0.850249
Target:  5'- -aCGGCucccauaGGCGaggcuAAGCGGAAACCGUc -3'
miRNA:   3'- aaGCUG-------CCGCguu--UUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 77707 0.71 0.851057
Target:  5'- cUC-ACGGCGCAGGAGUuccaagaaccGGAgGACUGCg -3'
miRNA:   3'- aAGcUGCCGCGUUUUCG----------CCU-UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 150055 0.71 0.851057
Target:  5'- -gCGACGGUGCcgccuAGCGGucgugcGGCUGCg -3'
miRNA:   3'- aaGCUGCCGCGuuu--UCGCCu-----UUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 66504 0.69 0.902062
Target:  5'- -gCGAUGGCGCGGuacagcGAGCGugcccugacGAcGACCGCg -3'
miRNA:   3'- aaGCUGCCGCGUU------UUCGC---------CU-UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.