miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 156093 0.66 0.981453
Target:  5'- aUCGAUGaacacuucccGCGCcacgccGCGGAGuACCGCg -3'
miRNA:   3'- aAGCUGC----------CGCGuuuu--CGCCUU-UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 153507 0.66 0.97926
Target:  5'- -aCGGCGGcCGCcccuGGCGGGGACg-- -3'
miRNA:   3'- aaGCUGCC-GCGuuu-UCGCCUUUGgcg -5'
24397 3' -52.8 NC_005264.1 + 45029 0.66 0.97926
Target:  5'- --gGACGGCgGCAGGauggacGGCgacgaGGAuGCCGCg -3'
miRNA:   3'- aagCUGCCG-CGUUU------UCG-----CCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 115150 1.09 0.00609
Target:  5'- uUUCGACGGCGCAAAAGCGGAAACCGCc -3'
miRNA:   3'- -AAGCUGCCGCGUUUUCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 45411 0.66 0.981453
Target:  5'- --gGGCGGCGCccu-GCGc--GCCGCg -3'
miRNA:   3'- aagCUGCCGCGuuuuCGCcuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 23751 0.66 0.981453
Target:  5'- gUCG-CGGUGCAGAccuuagaccaAGUuugGGGAACgGCg -3'
miRNA:   3'- aAGCuGCCGCGUUU----------UCG---CCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 98678 0.66 0.980814
Target:  5'- -cUGGCGGCGCuugcacaccggccgGAucGCGGc-GCCGUg -3'
miRNA:   3'- aaGCUGCCGCG--------------UUuuCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 78186 0.66 0.980597
Target:  5'- -aCGACGGcCGCAcaauacgcuaCGGAcACCGCc -3'
miRNA:   3'- aaGCUGCC-GCGUuuuc------GCCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 157434 0.66 0.97926
Target:  5'- aUCGG-GGCGCugaaguacGAGCGGGAAauacagaCGCg -3'
miRNA:   3'- aAGCUgCCGCGuu------UUCGCCUUUg------GCG- -5'
24397 3' -52.8 NC_005264.1 + 103536 0.66 0.97926
Target:  5'- cUCGagcggauauGCGGCGgAAcGGCaGAcGCCGCa -3'
miRNA:   3'- aAGC---------UGCCGCgUUuUCGcCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 120073 0.66 0.97926
Target:  5'- -gUGGCGGaCGCcggcuAGCGGGAGUCGUg -3'
miRNA:   3'- aaGCUGCC-GCGuuu--UCGCCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 36177 0.66 0.980159
Target:  5'- --aGGCGGCGUuucgugguugggcgaAAGAGC--AGACCGCa -3'
miRNA:   3'- aagCUGCCGCG---------------UUUUCGccUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 53222 0.66 0.981453
Target:  5'- gUgGACGcguaucucCGCGAAAGCGGcGGACCGg -3'
miRNA:   3'- aAgCUGCc-------GCGUUUUCGCC-UUUGGCg -5'
24397 3' -52.8 NC_005264.1 + 104393 0.66 0.97926
Target:  5'- aUCGACgccaaGGacauCGAAGGCGGAGACCu- -3'
miRNA:   3'- aAGCUG-----CCgc--GUUUUCGCCUUUGGcg -5'
24397 3' -52.8 NC_005264.1 + 6117 0.66 0.981453
Target:  5'- -aUGACGuccaucagguGCGgGAGGGCGaGGGCCGCg -3'
miRNA:   3'- aaGCUGC----------CGCgUUUUCGCcUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 38364 0.66 0.980597
Target:  5'- --gGGCGGUuaggaccuccuccgGCGAGAGCGGcGAcgccgagacagauGCCGCg -3'
miRNA:   3'- aagCUGCCG--------------CGUUUUCGCC-UU-------------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 104097 0.66 0.97926
Target:  5'- -cUGAUaGCGC---AGCGGcgGCCGCg -3'
miRNA:   3'- aaGCUGcCGCGuuuUCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 138910 0.66 0.97926
Target:  5'- -cCGGCGGCGCGAcca---GAACCGCc -3'
miRNA:   3'- aaGCUGCCGCGUUuucgccUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 152745 0.66 0.981453
Target:  5'- -aCGgacACGGcCGCGAugcccccGGCGGGAgauuccGCCGCg -3'
miRNA:   3'- aaGC---UGCC-GCGUUu------UCGCCUU------UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 31509 0.66 0.981453
Target:  5'- gUCaGGCGGCuccagGCucGGGCGGGgagGGCCGUu -3'
miRNA:   3'- aAG-CUGCCG-----CGuuUUCGCCU---UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.