miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 3' -52.8 NC_005264.1 + 22205 0.66 0.974305
Target:  5'- -gUGGCGuGCGCGGcAAGUGGAGucgUCGCc -3'
miRNA:   3'- aaGCUGC-CGCGUU-UUCGCCUUu--GGCG- -5'
24397 3' -52.8 NC_005264.1 + 109622 0.66 0.971529
Target:  5'- ---aAUGGCGU--GGGCGGggGgCGCg -3'
miRNA:   3'- aagcUGCCGCGuuUUCGCCuuUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 23751 0.66 0.981453
Target:  5'- gUCG-CGGUGCAGAccuuagaccaAGUuugGGGAACgGCg -3'
miRNA:   3'- aAGCuGCCGCGUUU----------UCG---CCUUUGgCG- -5'
24397 3' -52.8 NC_005264.1 + 78186 0.66 0.980597
Target:  5'- -aCGACGGcCGCAcaauacgcuaCGGAcACCGCc -3'
miRNA:   3'- aaGCUGCC-GCGUuuuc------GCCUuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 144408 0.66 0.97926
Target:  5'- cUUCGACcccGCGCc-GAGCGaGAGGgCGCg -3'
miRNA:   3'- -AAGCUGc--CGCGuuUUCGC-CUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 104097 0.66 0.97926
Target:  5'- -cUGAUaGCGC---AGCGGcgGCCGCg -3'
miRNA:   3'- aaGCUGcCGCGuuuUCGCCuuUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 35006 0.66 0.97926
Target:  5'- -gCGAgCGGCGCucgaagAGGAGCGcuGGCCGUc -3'
miRNA:   3'- aaGCU-GCCGCG------UUUUCGCcuUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 145972 0.66 0.97688
Target:  5'- cUUCGcCGGCGCGAAuacgaacugcGCGGcgGCUGg -3'
miRNA:   3'- -AAGCuGCCGCGUUUu---------CGCCuuUGGCg -5'
24397 3' -52.8 NC_005264.1 + 126272 0.66 0.97688
Target:  5'- -gCGuguUGGUccGCGGAGGCGGccauGCCGCu -3'
miRNA:   3'- aaGCu--GCCG--CGUUUUCGCCuu--UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 8221 0.66 0.97688
Target:  5'- -aCG-CGGC-CAucGGCcGAAGCCGCa -3'
miRNA:   3'- aaGCuGCCGcGUuuUCGcCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 74893 0.67 0.953975
Target:  5'- cUUCGACGaucgugcgauucGCGUAGAAGCcauuuacGGGGAgCGCg -3'
miRNA:   3'- -AAGCUGC------------CGCGUUUUCG-------CCUUUgGCG- -5'
24397 3' -52.8 NC_005264.1 + 59756 0.67 0.958262
Target:  5'- -gCGGCGGCuGCGAc-GCGGAcgcuUCGCg -3'
miRNA:   3'- aaGCUGCCG-CGUUuuCGCCUuu--GGCG- -5'
24397 3' -52.8 NC_005264.1 + 152565 0.66 0.971529
Target:  5'- uUUCGACaGGCGCGAAGaaucuaaguGCGaaccucuaguGAAGCaCGCg -3'
miRNA:   3'- -AAGCUG-CCGCGUUUU---------CGC----------CUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 6438 0.66 0.971529
Target:  5'- -gCGGCGGCGuCGcuGGCGGAGAa--- -3'
miRNA:   3'- aaGCUGCCGC-GUuuUCGCCUUUggcg -5'
24397 3' -52.8 NC_005264.1 + 133394 0.67 0.968542
Target:  5'- -gCGGCGGCGCAGcccguuGGUGGccccaAAGCCuacGCg -3'
miRNA:   3'- aaGCUGCCGCGUUu-----UCGCC-----UUUGG---CG- -5'
24397 3' -52.8 NC_005264.1 + 47589 0.67 0.968542
Target:  5'- cUCG-CGGggaCGCGuuGGgGGAGACuCGCg -3'
miRNA:   3'- aAGCuGCC---GCGUuuUCgCCUUUG-GCG- -5'
24397 3' -52.8 NC_005264.1 + 30429 0.67 0.968542
Target:  5'- -nCGGCGGa--GGAGGUcucggGGGAGCCGCg -3'
miRNA:   3'- aaGCUGCCgcgUUUUCG-----CCUUUGGCG- -5'
24397 3' -52.8 NC_005264.1 + 5508 0.67 0.96534
Target:  5'- cUCGuCGGCcuccGCGAAGGCGuaacGAAcgucGCCGCc -3'
miRNA:   3'- aAGCuGCCG----CGUUUUCGC----CUU----UGGCG- -5'
24397 3' -52.8 NC_005264.1 + 122035 0.67 0.961915
Target:  5'- cUCGGCGacccCGCGGcAAGCGGcu-CCGCu -3'
miRNA:   3'- aAGCUGCc---GCGUU-UUCGCCuuuGGCG- -5'
24397 3' -52.8 NC_005264.1 + 3685 0.67 0.961915
Target:  5'- cUCGGCGGCGagacgaGGAGGaCGGcGAUCGa -3'
miRNA:   3'- aAGCUGCCGCg-----UUUUC-GCCuUUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.