miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24397 5' -53.4 NC_005264.1 + 25633 0.66 0.978427
Target:  5'- -gGCGGUggggCcgCGCUCCGCGuuuuccucaaucggcACGUCUGg -3'
miRNA:   3'- gaCGCUAa---Ga-GUGAGGCGC---------------UGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 30698 0.66 0.977485
Target:  5'- -aGCGggUCauugaagaUCACuuUCCGCGGCAUCa- -3'
miRNA:   3'- gaCGCuaAG--------AGUG--AGGCGCUGUAGgc -5'
24397 5' -53.4 NC_005264.1 + 84637 0.66 0.977485
Target:  5'- aUGCuuauaaugC-CGCUCCGCG-CAUCCGg -3'
miRNA:   3'- gACGcuaa----GaGUGAGGCGCuGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 75079 0.66 0.974999
Target:  5'- -cGCuGGUUCuUCGCggcgCUGCGGCAggcgCCGg -3'
miRNA:   3'- gaCG-CUAAG-AGUGa---GGCGCUGUa---GGC- -5'
24397 5' -53.4 NC_005264.1 + 135121 0.66 0.974999
Target:  5'- gUGCcGUUCgccgaauuauGCcCCGCGACAUCCGu -3'
miRNA:   3'- gACGcUAAGag--------UGaGGCGCUGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 116244 0.66 0.969436
Target:  5'- gUGcCGGgagCUC-CgCCGUGACAUCCGu -3'
miRNA:   3'- gAC-GCUaa-GAGuGaGGCGCUGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 7941 0.67 0.966347
Target:  5'- -cGCGucgUC-CACggCCGCGGCGUCUu -3'
miRNA:   3'- gaCGCua-AGaGUGa-GGCGCUGUAGGc -5'
24397 5' -53.4 NC_005264.1 + 93086 0.67 0.966026
Target:  5'- -gGCGAccucggcUUCUCAgCUCgC-CGACAUCCGc -3'
miRNA:   3'- gaCGCU-------AAGAGU-GAG-GcGCUGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 127814 0.67 0.965051
Target:  5'- -cGCGAgccaUCUCccgacagcguugcCUCCGCGGCggCCGg -3'
miRNA:   3'- gaCGCUa---AGAGu------------GAGGCGCUGuaGGC- -5'
24397 5' -53.4 NC_005264.1 + 69037 0.67 0.951795
Target:  5'- -gGCGAgucgaUCUCuuuggCCGCGGCcgCCGg -3'
miRNA:   3'- gaCGCUa----AGAGuga--GGCGCUGuaGGC- -5'
24397 5' -53.4 NC_005264.1 + 128927 0.67 0.947586
Target:  5'- -cGUGGUgggCUCGCUCCGCcAUGUCUu -3'
miRNA:   3'- gaCGCUAa--GAGUGAGGCGcUGUAGGc -5'
24397 5' -53.4 NC_005264.1 + 16391 0.68 0.938935
Target:  5'- gUGCGGUUCgCAUgugcgcaagucagagCCGCGGCAUCg- -3'
miRNA:   3'- gACGCUAAGaGUGa--------------GGCGCUGUAGgc -5'
24397 5' -53.4 NC_005264.1 + 40890 0.68 0.933531
Target:  5'- -cGUccgUCUCGCUCgGCGAC-UCCGu -3'
miRNA:   3'- gaCGcuaAGAGUGAGgCGCUGuAGGC- -5'
24397 5' -53.4 NC_005264.1 + 59029 0.68 0.933531
Target:  5'- -gGCGcgUCaggUCGguCUCCGCG-CAUCCGa -3'
miRNA:   3'- gaCGCuaAG---AGU--GAGGCGCuGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 122121 0.68 0.933531
Target:  5'- -cGCG-UUCgaCACgUCCGCGAUAUUCGa -3'
miRNA:   3'- gaCGCuAAGa-GUG-AGGCGCUGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 159916 0.68 0.933531
Target:  5'- -cGUccgUCUCGCUCgGCGAC-UCCGu -3'
miRNA:   3'- gaCGcuaAGAGUGAGgCGCUGuAGGC- -5'
24397 5' -53.4 NC_005264.1 + 62623 0.69 0.917306
Target:  5'- uCUGCGAggucUUCUCGC-CCGC--CGUCCa -3'
miRNA:   3'- -GACGCU----AAGAGUGaGGCGcuGUAGGc -5'
24397 5' -53.4 NC_005264.1 + 122376 0.7 0.871134
Target:  5'- -gGCGAgggucUUUCGCUCCGCucCGUCUGg -3'
miRNA:   3'- gaCGCUa----AGAGUGAGGCGcuGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 3349 0.7 0.871134
Target:  5'- -gGCGAgggucUUUCGCUCCGCucCGUCUGg -3'
miRNA:   3'- gaCGCUa----AGAGUGAGGCGcuGUAGGC- -5'
24397 5' -53.4 NC_005264.1 + 4685 0.71 0.814426
Target:  5'- cCUGCGAaagCU-GCUCUGCGACGUUCu -3'
miRNA:   3'- -GACGCUaa-GAgUGAGGCGCUGUAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.