miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 3' -54.3 NC_005264.1 + 53785 0.66 0.96358
Target:  5'- gGGcUGCUGuUCCAggucagGGAUcugaaucaaGUGCGCUGCg -3'
miRNA:   3'- -CCaACGAC-GGGUa-----UCUG---------CACGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 5221 0.66 0.96358
Target:  5'- cGUUGCUGUCCAUAaugcGCGaGCAggaCGCc -3'
miRNA:   3'- cCAACGACGGGUAUc---UGCaCGUg--GCG- -5'
24398 3' -54.3 NC_005264.1 + 84336 0.66 0.96358
Target:  5'- uGGUUaCUGgCCucaccGCGUGCACCGg -3'
miRNA:   3'- -CCAAcGACgGGuauc-UGCACGUGGCg -5'
24398 3' -54.3 NC_005264.1 + 29092 0.66 0.96358
Target:  5'- --aUGuCUGCgUAUAGGCucccaGCGCCGCa -3'
miRNA:   3'- ccaAC-GACGgGUAUCUGca---CGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 22023 0.66 0.963241
Target:  5'- cGGUgccgGCUGCCUcu-GugGUaGCuacauuuGCCGCu -3'
miRNA:   3'- -CCAa---CGACGGGuauCugCA-CG-------UGGCG- -5'
24398 3' -54.3 NC_005264.1 + 126857 0.66 0.960094
Target:  5'- ---cGcCUGCCCAUAcACGUacgaGCuACCGCu -3'
miRNA:   3'- ccaaC-GACGGGUAUcUGCA----CG-UGGCG- -5'
24398 3' -54.3 NC_005264.1 + 7831 0.66 0.960094
Target:  5'- ---cGcCUGCCCAUAcACGUacgaGCuACCGCu -3'
miRNA:   3'- ccaaC-GACGGGUAUcUGCA----CG-UGGCG- -5'
24398 3' -54.3 NC_005264.1 + 91766 0.66 0.956385
Target:  5'- uGGUUGaggaacCCCAUGauGGUGUGCAUCGCa -3'
miRNA:   3'- -CCAACgac---GGGUAU--CUGCACGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 67860 0.66 0.956385
Target:  5'- uGGUgGCUGgUUGUAGGCGUagagggaauGgGCCGCg -3'
miRNA:   3'- -CCAaCGACgGGUAUCUGCA---------CgUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 680 0.66 0.956385
Target:  5'- cGGgaGcCUGCCCGaacguuuacgguUAGAUagggaaaUGCGCCGCg -3'
miRNA:   3'- -CCaaC-GACGGGU------------AUCUGc------ACGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 82590 0.66 0.956385
Target:  5'- ---cGCUcGCCCucaAGGCGUGacaAUCGCg -3'
miRNA:   3'- ccaaCGA-CGGGua-UCUGCACg--UGGCG- -5'
24398 3' -54.3 NC_005264.1 + 78087 0.66 0.956385
Target:  5'- ---cGCUGCCCGUcguugcGGcACGUGacucagaagACCGCa -3'
miRNA:   3'- ccaaCGACGGGUA------UC-UGCACg--------UGGCG- -5'
24398 3' -54.3 NC_005264.1 + 82298 0.66 0.954051
Target:  5'- -cUUGCcGCgCCGUAcuguuugggggcgacGACGUugcGCACCGCg -3'
miRNA:   3'- ccAACGaCG-GGUAU---------------CUGCA---CGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 141583 0.66 0.952448
Target:  5'- --cUGCcGCCUAUGGucagcuCGUGCGCCc- -3'
miRNA:   3'- ccaACGaCGGGUAUCu-----GCACGUGGcg -5'
24398 3' -54.3 NC_005264.1 + 52941 0.66 0.952448
Target:  5'- uGGccGC-GCCCGc-GGCGcauUGCGCCGCg -3'
miRNA:   3'- -CCaaCGaCGGGUauCUGC---ACGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 57844 0.66 0.949975
Target:  5'- cGGUgcGCUGCaaacggucgucagcgCCAgAGACGgcgGCACgGCg -3'
miRNA:   3'- -CCAa-CGACG---------------GGUaUCUGCa--CGUGgCG- -5'
24398 3' -54.3 NC_005264.1 + 72462 0.66 0.948279
Target:  5'- cGGgcGCcGCCgGUcGGAuCGUGUACCGg -3'
miRNA:   3'- -CCaaCGaCGGgUA-UCU-GCACGUGGCg -5'
24398 3' -54.3 NC_005264.1 + 21937 0.67 0.945665
Target:  5'- cGGUUGCcgcuucgauggucgaUGCCCGagAGugGU-CGCgGCa -3'
miRNA:   3'- -CCAACG---------------ACGGGUa-UCugCAcGUGgCG- -5'
24398 3' -54.3 NC_005264.1 + 112260 0.67 0.943875
Target:  5'- ---gGCUGCUCAgcGccGCGUGCGcuucCCGCa -3'
miRNA:   3'- ccaaCGACGGGUauC--UGCACGU----GGCG- -5'
24398 3' -54.3 NC_005264.1 + 28751 0.67 0.939233
Target:  5'- --cUGC-GCCC--AGACGUGCucuaGCUGCg -3'
miRNA:   3'- ccaACGaCGGGuaUCUGCACG----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.