miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 3' -54.3 NC_005264.1 + 28751 0.67 0.939233
Target:  5'- --cUGC-GCCC--AGACGUGCucuaGCUGCg -3'
miRNA:   3'- ccaACGaCGGGuaUCUGCACG----UGGCG- -5'
24398 3' -54.3 NC_005264.1 + 119474 0.67 0.939233
Target:  5'- cGGUcgGCauauacUGCUUGUGGAUGUGgCugCGCa -3'
miRNA:   3'- -CCAa-CG------ACGGGUAUCUGCAC-GugGCG- -5'
24398 3' -54.3 NC_005264.1 + 37279 0.67 0.939233
Target:  5'- --aUGCcGCCCAUucAGGuuuaUGCGCCGCa -3'
miRNA:   3'- ccaACGaCGGGUA--UCUgc--ACGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 84286 0.67 0.936333
Target:  5'- --aUGCUGCUUGUucuugcuaugggccaAGuCGUGCACCGg -3'
miRNA:   3'- ccaACGACGGGUA---------------UCuGCACGUGGCg -5'
24398 3' -54.3 NC_005264.1 + 150396 0.67 0.934351
Target:  5'- --cUGCcggGCCUuUAGACc-GCACCGCg -3'
miRNA:   3'- ccaACGa--CGGGuAUCUGcaCGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 100067 0.67 0.934351
Target:  5'- gGGuUUGCgggGCCUA-GGGCGUaGCAUgGCg -3'
miRNA:   3'- -CC-AACGa--CGGGUaUCUGCA-CGUGgCG- -5'
24398 3' -54.3 NC_005264.1 + 31369 0.67 0.934351
Target:  5'- --cUGCcggGCCUuUAGACc-GCACCGCg -3'
miRNA:   3'- ccaACGa--CGGGuAUCUGcaCGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 19198 0.67 0.929228
Target:  5'- aGGUucgGCuUGCCCAUGG-UGUGCAgggaGCa -3'
miRNA:   3'- -CCAa--CG-ACGGGUAUCuGCACGUgg--CG- -5'
24398 3' -54.3 NC_005264.1 + 157390 0.67 0.929228
Target:  5'- uGUUGCUGCgCAUGcuguACG-GCGCgGCg -3'
miRNA:   3'- cCAACGACGgGUAUc---UGCaCGUGgCG- -5'
24398 3' -54.3 NC_005264.1 + 152306 0.67 0.923863
Target:  5'- ---cGC-GCCCcugaGGGCG-GCGCCGCa -3'
miRNA:   3'- ccaaCGaCGGGua--UCUGCaCGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 59546 0.67 0.923863
Target:  5'- cGGUcucUGaCUGCCCG-GGACa-GUACCGCc -3'
miRNA:   3'- -CCA---AC-GACGGGUaUCUGcaCGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 33279 0.67 0.923863
Target:  5'- ---cGC-GCCCcugaGGGCG-GCGCCGCa -3'
miRNA:   3'- ccaaCGaCGGGua--UCUGCaCGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 31783 0.68 0.912409
Target:  5'- cGGgcGCUucGCCUAaGGGCGgcgGuCGCCGCc -3'
miRNA:   3'- -CCaaCGA--CGGGUaUCUGCa--C-GUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 96636 0.68 0.912409
Target:  5'- ---cGCUGgCCGcGGAgGcGCACCGCc -3'
miRNA:   3'- ccaaCGACgGGUaUCUgCaCGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 150809 0.68 0.912409
Target:  5'- cGGgcGCUucGCCUAaGGGCGgcgGuCGCCGCc -3'
miRNA:   3'- -CCaaCGA--CGGGUaUCUGCa--C-GUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 115782 0.68 0.911811
Target:  5'- aGGUcaGCUugucccaGCCCAUAGAcaCGUGgGaCCGCg -3'
miRNA:   3'- -CCAa-CGA-------CGGGUAUCU--GCACgU-GGCG- -5'
24398 3' -54.3 NC_005264.1 + 83224 0.68 0.906322
Target:  5'- gGGccGUUGCgCGUGGGCGUcuagGCcGCCGCu -3'
miRNA:   3'- -CCaaCGACGgGUAUCUGCA----CG-UGGCG- -5'
24398 3' -54.3 NC_005264.1 + 39116 0.68 0.906322
Target:  5'- ---aGCUGCUguCGUGGACGcgGCGCCa- -3'
miRNA:   3'- ccaaCGACGG--GUAUCUGCa-CGUGGcg -5'
24398 3' -54.3 NC_005264.1 + 158143 0.68 0.906322
Target:  5'- ---aGCUGCUguCGUGGACGcgGCGCCa- -3'
miRNA:   3'- ccaaCGACGG--GUAUCUGCa-CGUGGcg -5'
24398 3' -54.3 NC_005264.1 + 111622 0.68 0.906322
Target:  5'- -aUUGgauCCCGaGGACGUGUACCGCc -3'
miRNA:   3'- ccAACgacGGGUaUCUGCACGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.