miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 3' -54.3 NC_005264.1 + 39913 0.69 0.864931
Target:  5'- -uUUGUUGUCg--AGACGcGCACCGCu -3'
miRNA:   3'- ccAACGACGGguaUCUGCaCGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 137178 0.7 0.801802
Target:  5'- --cUGCUGCCCccAGACGUGCcgauugaggaaaaCGCg -3'
miRNA:   3'- ccaACGACGGGuaUCUGCACGug-----------GCG- -5'
24398 3' -54.3 NC_005264.1 + 78476 0.7 0.801802
Target:  5'- uGGUUGCUcacauuauaggauacGCCUc--GACGguguugGCACCGCg -3'
miRNA:   3'- -CCAACGA---------------CGGGuauCUGCa-----CGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 39101 0.7 0.83304
Target:  5'- ---aGCUGCCCGUGcACGccuacguguUGCugCGCu -3'
miRNA:   3'- ccaaCGACGGGUAUcUGC---------ACGugGCG- -5'
24398 3' -54.3 NC_005264.1 + 17371 0.69 0.841308
Target:  5'- cGGcgGCgcgGUCUGUGuACGUGCGCCGUu -3'
miRNA:   3'- -CCaaCGa--CGGGUAUcUGCACGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 131980 0.69 0.849384
Target:  5'- ---cGUUGCCUAccGGGCGgcGCGCCGCc -3'
miRNA:   3'- ccaaCGACGGGUa-UCUGCa-CGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 3449 0.69 0.849384
Target:  5'- gGGUccGCcGCCCGUGG-CGcccgGUGCCGCa -3'
miRNA:   3'- -CCAa-CGaCGGGUAUCuGCa---CGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 40307 0.69 0.849384
Target:  5'- ---aGCUGCgCGUAGACGgcgaGCGCaGCa -3'
miRNA:   3'- ccaaCGACGgGUAUCUGCa---CGUGgCG- -5'
24398 3' -54.3 NC_005264.1 + 17316 0.69 0.856482
Target:  5'- uGGUcGCUGCuucuccguugCCGUGGACGUcuGCAgugccuuCCGCg -3'
miRNA:   3'- -CCAaCGACG----------GGUAUCUGCA--CGU-------GGCG- -5'
24398 3' -54.3 NC_005264.1 + 68413 0.71 0.789089
Target:  5'- aGGacggGCUGCUCGcucUGGACuaccgGCGCCGCg -3'
miRNA:   3'- -CCaa--CGACGGGU---AUCUGca---CGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 6498 0.71 0.789089
Target:  5'- cGUUGCUGCCgCAcuUGGuagcgaagcagcGCGUuugcaGCGCCGCg -3'
miRNA:   3'- cCAACGACGG-GU--AUC------------UGCA-----CGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 86683 0.71 0.779835
Target:  5'- uGGaagUGCa-CCCGUuuuacGACGUGUACCGCg -3'
miRNA:   3'- -CCa--ACGacGGGUAu----CUGCACGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 73052 0.74 0.630159
Target:  5'- aGGgaugGCUGCaCAUGGACGgaugGC-CCGCg -3'
miRNA:   3'- -CCaa--CGACGgGUAUCUGCa---CGuGGCG- -5'
24398 3' -54.3 NC_005264.1 + 22948 0.73 0.640451
Target:  5'- gGGUgacUGCgauugGCCCuUAGACGUG-ACCGUa -3'
miRNA:   3'- -CCA---ACGa----CGGGuAUCUGCACgUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 39590 0.72 0.691642
Target:  5'- --aUGCUGCCCccgccAGACGgaGCugCGCg -3'
miRNA:   3'- ccaACGACGGGua---UCUGCa-CGugGCG- -5'
24398 3' -54.3 NC_005264.1 + 59781 0.72 0.721825
Target:  5'- cGUgGCUGUCCAcGGcCGUGUccGCCGCg -3'
miRNA:   3'- cCAaCGACGGGUaUCuGCACG--UGGCG- -5'
24398 3' -54.3 NC_005264.1 + 159564 0.72 0.721825
Target:  5'- ---cGUcGCCCAgGGACGUGgCGCUGCg -3'
miRNA:   3'- ccaaCGaCGGGUaUCUGCAC-GUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 97439 0.71 0.750339
Target:  5'- cGGgcGCcGCCgCGgaucugaUAGACGUaGCGCCGCu -3'
miRNA:   3'- -CCaaCGaCGG-GU-------AUCUGCA-CGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 136451 0.71 0.751308
Target:  5'- uGGgcGCUgaggccgcGCUCAgAGACG-GCGCCGCg -3'
miRNA:   3'- -CCaaCGA--------CGGGUaUCUGCaCGUGGCG- -5'
24398 3' -54.3 NC_005264.1 + 53271 0.71 0.779835
Target:  5'- uGGcUUGCUGUCCc---GCG-GCGCCGCa -3'
miRNA:   3'- -CC-AACGACGGGuaucUGCaCGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.