Results 1 - 20 of 106 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 71628 | 0.66 | 0.795141 |
Target: 5'- gCgGC-GGCAGAgAUaGCCCAGUGcGCGa -3' miRNA: 3'- -GgCGuCCGUCUgUA-CGGGUCGU-CGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 42609 | 0.66 | 0.795141 |
Target: 5'- cCCGCAGccauggccGCGGAC--GCCCGGUccgcuGCGUa -3' miRNA: 3'- -GGCGUC--------CGUCUGuaCGGGUCGu----CGCA- -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 161636 | 0.66 | 0.795141 |
Target: 5'- cCCGCAGccauggccGCGGAC--GCCCGGUccgcuGCGUa -3' miRNA: 3'- -GGCGUC--------CGUCUGuaCGGGUCGu----CGCA- -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 146777 | 0.66 | 0.795141 |
Target: 5'- gCCGCGcGGCGGuucUcgGUgCGGCGGUGUg -3' miRNA: 3'- -GGCGU-CCGUCu--GuaCGgGUCGUCGCA- -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 46412 | 0.66 | 0.794252 |
Target: 5'- cCCGCGGcCAGACGccCCCAGCGaccugccGCGg -3' miRNA: 3'- -GGCGUCcGUCUGUacGGGUCGU-------CGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 39485 | 0.66 | 0.786188 |
Target: 5'- gCCGCcagGGGCAGGCcUGCgCuGUGGUGg -3' miRNA: 3'- -GGCG---UCCGUCUGuACGgGuCGUCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 117867 | 0.66 | 0.786188 |
Target: 5'- -gGCAuGGCGGACAgcuuuucccGCCCGGCAucuGUGa -3' miRNA: 3'- ggCGU-CCGUCUGUa--------CGGGUCGU---CGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 158512 | 0.66 | 0.786188 |
Target: 5'- gCCGCcagGGGCAGGCcUGCgCuGUGGUGg -3' miRNA: 3'- -GGCG---UCCGUCUGuACGgGuCGUCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 52868 | 0.66 | 0.786188 |
Target: 5'- -aGCGGGCAGGCucgcgguaccUGCCaUAGCAGgGc -3' miRNA: 3'- ggCGUCCGUCUGu---------ACGG-GUCGUCgCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 18618 | 0.66 | 0.786188 |
Target: 5'- aCCGCA-GCGGACGUGUuuGuGCAGUu- -3' miRNA: 3'- -GGCGUcCGUCUGUACGggU-CGUCGca -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 150839 | 0.66 | 0.785285 |
Target: 5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3' miRNA: 3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 31813 | 0.66 | 0.785285 |
Target: 5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3' miRNA: 3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 40287 | 0.66 | 0.783475 |
Target: 5'- gCCGCgucgcgguucgacgAGGCGGACGgcgaggauccccUGCCCcccgccgcguGCGGCGg -3' miRNA: 3'- -GGCG--------------UCCGUCUGU------------ACGGGu---------CGUCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 159314 | 0.66 | 0.783475 |
Target: 5'- gCCGCgucgcgguucgacgAGGCGGACGgcgaggauccccUGCCCcccgccgcguGCGGCGg -3' miRNA: 3'- -GGCG--------------UCCGUCUGU------------ACGGGu---------CGUCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 79692 | 0.66 | 0.783475 |
Target: 5'- cCCGCgacagacaccaugaGGGCAGACGcGCCUccGCGGCc- -3' miRNA: 3'- -GGCG--------------UCCGUCUGUaCGGGu-CGUCGca -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 3658 | 0.66 | 0.7771 |
Target: 5'- gCCGCcgucucgacgauGGGCGGcCGU-CUCGGCGGCGa -3' miRNA: 3'- -GGCG------------UCCGUCuGUAcGGGUCGUCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 97464 | 0.66 | 0.7771 |
Target: 5'- gUCGCcuGCgAGACucuaCCCGGCGGCGUc -3' miRNA: 3'- -GGCGucCG-UCUGuac-GGGUCGUCGCA- -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 64599 | 0.66 | 0.7771 |
Target: 5'- aCCgGCgagAGGuUAGACAgcuuuucggugcUGUCCAGCAGCGc -3' miRNA: 3'- -GG-CG---UCC-GUCUGU------------ACGGGUCGUCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 78608 | 0.66 | 0.7771 |
Target: 5'- aCGC-GGUAGGCAaGCUC-GCGGCGc -3' miRNA: 3'- gGCGuCCGUCUGUaCGGGuCGUCGCa -5' |
|||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 122685 | 0.66 | 0.7771 |
Target: 5'- gCCGCcgucucgacgauGGGCGGcCGU-CUCGGCGGCGa -3' miRNA: 3'- -GGCG------------UCCGUCuGUAcGGGUCGUCGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home