miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 65563 0.66 0.776185
Target:  5'- gCGCgAGGCAGcggccacuaccguGCcaagGCCCGGCGGCc- -3'
miRNA:   3'- gGCG-UCCGUC-------------UGua--CGGGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 68019 0.66 0.758558
Target:  5'- gCCGCGGagcgccaaagaGCGGAuaaccgcuucCGUGCCCgacgaGGCGGCGa -3'
miRNA:   3'- -GGCGUC-----------CGUCU----------GUACGGG-----UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 24916 0.66 0.767888
Target:  5'- gUCGCuGGGguGACGcgaucuuaucGCCCGGCuGCGg -3'
miRNA:   3'- -GGCG-UCCguCUGUa---------CGGGUCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 138462 0.66 0.77435
Target:  5'- gCCGCcGGgGGAgccgcgaagccgguCAUGCCagAGCGGCGg -3'
miRNA:   3'- -GGCGuCCgUCU--------------GUACGGg-UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 161636 0.66 0.795141
Target:  5'- cCCGCAGccauggccGCGGAC--GCCCGGUccgcuGCGUa -3'
miRNA:   3'- -GGCGUC--------CGUCUGuaCGGGUCGu----CGCA- -5'
24398 5' -59.2 NC_005264.1 + 78608 0.66 0.7771
Target:  5'- aCGC-GGUAGGCAaGCUC-GCGGCGc -3'
miRNA:   3'- gGCGuCCGUCUGUaCGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 122685 0.66 0.7771
Target:  5'- gCCGCcgucucgacgauGGGCGGcCGU-CUCGGCGGCGa -3'
miRNA:   3'- -GGCG------------UCCGUCuGUAcGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 79692 0.66 0.783475
Target:  5'- cCCGCgacagacaccaugaGGGCAGACGcGCCUccGCGGCc- -3'
miRNA:   3'- -GGCG--------------UCCGUCUGUaCGGGu-CGUCGca -5'
24398 5' -59.2 NC_005264.1 + 150839 0.66 0.785285
Target:  5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3'
miRNA:   3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 40308 0.66 0.758558
Target:  5'- gCUGCGcGUAGACGgcgaGCgCAGCAGUGUc -3'
miRNA:   3'- -GGCGUcCGUCUGUa---CGgGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 123012 0.66 0.755738
Target:  5'- aCCGCcaagcaGGGCGGcACAUGCCUccucgcccaccaggGGCuuGGCGg -3'
miRNA:   3'- -GGCG------UCCGUC-UGUACGGG--------------UCG--UCGCa -5'
24398 5' -59.2 NC_005264.1 + 101315 0.66 0.749121
Target:  5'- gCC-CAGcGCGauaauCAUGCCCAGguGCGg -3'
miRNA:   3'- -GGcGUC-CGUcu---GUACGGGUCguCGCa -5'
24398 5' -59.2 NC_005264.1 + 42609 0.66 0.795141
Target:  5'- cCCGCAGccauggccGCGGAC--GCCCGGUccgcuGCGUa -3'
miRNA:   3'- -GGCGUC--------CGUCUGuaCGGGUCGu----CGCA- -5'
24398 5' -59.2 NC_005264.1 + 52868 0.66 0.786188
Target:  5'- -aGCGGGCAGGCucgcgguaccUGCCaUAGCAGgGc -3'
miRNA:   3'- ggCGUCCGUCUGu---------ACGG-GUCGUCgCa -5'
24398 5' -59.2 NC_005264.1 + 36122 0.66 0.776185
Target:  5'- cUCGCcGGCcGACGauuucuuUGCCCAcGUAGCGc -3'
miRNA:   3'- -GGCGuCCGuCUGU-------ACGGGU-CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 146777 0.66 0.795141
Target:  5'- gCCGCGcGGCGGuucUcgGUgCGGCGGUGUg -3'
miRNA:   3'- -GGCGU-CCGUCu--GuaCGgGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 159314 0.66 0.783475
Target:  5'- gCCGCgucgcgguucgacgAGGCGGACGgcgaggauccccUGCCCcccgccgcguGCGGCGg -3'
miRNA:   3'- -GGCG--------------UCCGUCUGU------------ACGGGu---------CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 123616 0.66 0.767888
Target:  5'- aCGCAGGCccuccccGcCAgcGCCgCGGCGGCGUa -3'
miRNA:   3'- gGCGUCCGu------CuGUa-CGG-GUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 64599 0.66 0.7771
Target:  5'- aCCgGCgagAGGuUAGACAgcuuuucggugcUGUCCAGCAGCGc -3'
miRNA:   3'- -GG-CG---UCC-GUCUGU------------ACGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 158512 0.66 0.786188
Target:  5'- gCCGCcagGGGCAGGCcUGCgCuGUGGUGg -3'
miRNA:   3'- -GGCG---UCCGUCUGuACGgGuCGUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.