miRNA display CGI


Results 41 - 60 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 92159 0.67 0.690717
Target:  5'- cCCGCGGGCGuaaaaauUGCCUgccGGCGGCGc -3'
miRNA:   3'- -GGCGUCCGUcugu---ACGGG---UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 148899 0.67 0.729957
Target:  5'- gCCGCGuGGCauAGACuUGCUgCGGCAGCu- -3'
miRNA:   3'- -GGCGU-CCG--UCUGuACGG-GUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 124772 0.67 0.739585
Target:  5'- aCgGCGGGUAGGCAUugugagagcggcGCCUuccacugacaAGCGGCGc -3'
miRNA:   3'- -GgCGUCCGUCUGUA------------CGGG----------UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 67630 0.67 0.739585
Target:  5'- aCGCGGGCgcAGGgGUGUCCuGC-GCGg -3'
miRNA:   3'- gGCGUCCG--UCUgUACGGGuCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 84610 0.67 0.739585
Target:  5'- cCCGCAaggauGCAGcguugcuccguACGUGCCCcuGGCGGUGUc -3'
miRNA:   3'- -GGCGUc----CGUC-----------UGUACGGG--UCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 26365 0.67 0.720248
Target:  5'- gCCGC-GGCAGGC-UGCgCGGCGcCGUc -3'
miRNA:   3'- -GGCGuCCGUCUGuACGgGUCGUcGCA- -5'
24398 5' -59.2 NC_005264.1 + 70675 0.67 0.739585
Target:  5'- gCCGCcGGCAGGCAauuuuuacGCCC-GCGGgCGa -3'
miRNA:   3'- -GGCGuCCGUCUGUa-------CGGGuCGUC-GCa -5'
24398 5' -59.2 NC_005264.1 + 75727 0.67 0.729957
Target:  5'- cCCGCGGGCgccggAGGCcaGUCUGGguGCGUu -3'
miRNA:   3'- -GGCGUCCG-----UCUGuaCGGGUCguCGCA- -5'
24398 5' -59.2 NC_005264.1 + 99387 0.67 0.729957
Target:  5'- uCCGCAacGGCGGAgcggggUAUGCCaGGCAaGCGa -3'
miRNA:   3'- -GGCGU--CCGUCU------GUACGGgUCGU-CGCa -5'
24398 5' -59.2 NC_005264.1 + 157872 0.67 0.720248
Target:  5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3'
miRNA:   3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 135674 0.67 0.720248
Target:  5'- gCUGCGGGCugauaauguuAGACAUGCUUAGCAa--- -3'
miRNA:   3'- -GGCGUCCG----------UCUGUACGGGUCGUcgca -5'
24398 5' -59.2 NC_005264.1 + 160032 0.67 0.710466
Target:  5'- cCCGUuuAGGUGGGCu--CCCAgGCAGCGg -3'
miRNA:   3'- -GGCG--UCCGUCUGuacGGGU-CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 68259 0.67 0.714387
Target:  5'- gCCGCGGGCGGccuGCugcUGCcgccucuuugcguccCCAGCGGCa- -3'
miRNA:   3'- -GGCGUCCGUC---UGu--ACG---------------GGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 77798 0.67 0.710466
Target:  5'- aCCGCGGcGCAGACG-GCauugaCGGC-GCGg -3'
miRNA:   3'- -GGCGUC-CGUCUGUaCGg----GUCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 93769 0.67 0.700619
Target:  5'- uUGCGGuGCGcGACGacgaugaccUGCCCGGCGGCc- -3'
miRNA:   3'- gGCGUC-CGU-CUGU---------ACGGGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 59466 0.67 0.700619
Target:  5'- cCCGCGcGGCAGGCAUGacgaCUGGCA-UGUa -3'
miRNA:   3'- -GGCGU-CCGUCUGUACg---GGUCGUcGCA- -5'
24398 5' -59.2 NC_005264.1 + 150896 0.67 0.700619
Target:  5'- cUCGuCAGGCaaguGGACuuucacCCCAGCGGCGa -3'
miRNA:   3'- -GGC-GUCCG----UCUGuac---GGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 89546 0.67 0.700619
Target:  5'- gCGCGGGCAG---UGUCCGGCgAGCu- -3'
miRNA:   3'- gGCGUCCGUCuguACGGGUCG-UCGca -5'
24398 5' -59.2 NC_005264.1 + 53255 0.67 0.689725
Target:  5'- cCCGCGGGCGcgugucuGGCuugcUGUCCcGCGGCGc -3'
miRNA:   3'- -GGCGUCCGU-------CUGu---ACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 125687 0.68 0.680768
Target:  5'- -aGCuccGGCAGAgAUccugGCgCCAGCAGCGa -3'
miRNA:   3'- ggCGu--CCGUCUgUA----CG-GGUCGUCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.