miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 59899 0.68 0.670781
Target:  5'- aUCGCGGGCca--GUGCCCuGUGGCGc -3'
miRNA:   3'- -GGCGUCCGucugUACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 157361 0.68 0.670781
Target:  5'- -gGCGGGCccuggccGugAUGCUgGGCGGCGg -3'
miRNA:   3'- ggCGUCCGu------CugUACGGgUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 66193 0.68 0.660762
Target:  5'- cCCGCAucGGCGGGCGgugcGCCUccgcGGcCAGCGa -3'
miRNA:   3'- -GGCGU--CCGUCUGUa---CGGG----UC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 123352 0.68 0.630605
Target:  5'- aCCaCAGcGCAGGCcUGCCCcuGGCGGCu- -3'
miRNA:   3'- -GGcGUC-CGUCUGuACGGG--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 49141 0.68 0.660762
Target:  5'- aCGUucaAGGUgcaAGACAUGCCCcacAGCGGCc- -3'
miRNA:   3'- gGCG---UCCG---UCUGUACGGG---UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 2639 0.68 0.660762
Target:  5'- -aGCGGGCAGGuugcGCUCuGCAGCGg -3'
miRNA:   3'- ggCGUCCGUCUgua-CGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 109707 0.68 0.650722
Target:  5'- gCCGC-GGCAGAU-UGCCCGGCcuccucGGCc- -3'
miRNA:   3'- -GGCGuCCGUCUGuACGGGUCG------UCGca -5'
24398 5' -59.2 NC_005264.1 + 68259 0.67 0.714387
Target:  5'- gCCGCGGGCGGccuGCugcUGCcgccucuuugcguccCCAGCGGCa- -3'
miRNA:   3'- -GGCGUCCGUC---UGu--ACG---------------GGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 53255 0.67 0.689725
Target:  5'- cCCGCGGGCGcgugucuGGCuugcUGUCCcGCGGCGc -3'
miRNA:   3'- -GGCGUCCGU-------CUGu---ACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 77798 0.67 0.710466
Target:  5'- aCCGCGGcGCAGACG-GCauugaCGGC-GCGg -3'
miRNA:   3'- -GGCGUC-CGUCUGUaCGg----GUCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 160032 0.67 0.710466
Target:  5'- cCCGUuuAGGUGGGCu--CCCAgGCAGCGg -3'
miRNA:   3'- -GGCG--UCCGUCUGuacGGGU-CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 92675 0.67 0.710466
Target:  5'- cUCGCAGGUauugcgguagugAGGCGccGCCgCGGCAGCa- -3'
miRNA:   3'- -GGCGUCCG------------UCUGUa-CGG-GUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 31870 0.67 0.700619
Target:  5'- cUCGuCAGGCaaguGGACuuucacCCCAGCGGCGa -3'
miRNA:   3'- -GGC-GUCCG----UCUGuac---GGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 92159 0.67 0.690717
Target:  5'- cCCGCGGGCGuaaaaauUGCCUgccGGCGGCGc -3'
miRNA:   3'- -GGCGUCCGUcugu---ACGGG---UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 84610 0.67 0.739585
Target:  5'- cCCGCAaggauGCAGcguugcuccguACGUGCCCcuGGCGGUGUc -3'
miRNA:   3'- -GGCGUc----CGUC-----------UGUACGGG--UCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 70675 0.67 0.739585
Target:  5'- gCCGCcGGCAGGCAauuuuuacGCCC-GCGGgCGa -3'
miRNA:   3'- -GGCGuCCGUCUGUa-------CGGGuCGUC-GCa -5'
24398 5' -59.2 NC_005264.1 + 75727 0.67 0.729957
Target:  5'- cCCGCGGGCgccggAGGCcaGUCUGGguGCGUu -3'
miRNA:   3'- -GGCGUCCG-----UCUGuaCGGGUCguCGCA- -5'
24398 5' -59.2 NC_005264.1 + 99387 0.67 0.729957
Target:  5'- uCCGCAacGGCGGAgcggggUAUGCCaGGCAaGCGa -3'
miRNA:   3'- -GGCGU--CCGUCU------GUACGGgUCGU-CGCa -5'
24398 5' -59.2 NC_005264.1 + 157872 0.67 0.720248
Target:  5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3'
miRNA:   3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 135674 0.67 0.720248
Target:  5'- gCUGCGGGCugauaauguuAGACAUGCUUAGCAa--- -3'
miRNA:   3'- -GGCGUCCG----------UCUGUACGGGUCGUcgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.