miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 114614 1.08 0.001653
Target:  5'- gCCGCAGGCAGACAUGCCCAGCAGCGUc -3'
miRNA:   3'- -GGCGUCCGUCUGUACGGGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 153120 0.78 0.203388
Target:  5'- gCCGC-GGCGGGCAcaaugGCUCAGCGGCGc -3'
miRNA:   3'- -GGCGuCCGUCUGUa----CGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 34093 0.78 0.203388
Target:  5'- gCCGC-GGCGGGCAcaaugGCUCAGCGGCGc -3'
miRNA:   3'- -GGCGuCCGUCUGUa----CGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 133261 0.77 0.218729
Target:  5'- gCCGCAGGCAaACAgGCCgAGCGGCa- -3'
miRNA:   3'- -GGCGUCCGUcUGUaCGGgUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 98411 0.77 0.229497
Target:  5'- gCCGC-GGCAGACgucaucgccGUGCCC-GCGGCGUc -3'
miRNA:   3'- -GGCGuCCGUCUG---------UACGGGuCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 127201 0.76 0.246485
Target:  5'- gCGCAGGUAcaACGUGCCCucGCAGCGg -3'
miRNA:   3'- gGCGUCCGUc-UGUACGGGu-CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 94598 0.75 0.296881
Target:  5'- cCCGCGGcGCGGGCAUGgCUuggcgguGCGGCGUg -3'
miRNA:   3'- -GGCGUC-CGUCUGUACgGGu------CGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 83732 0.75 0.303715
Target:  5'- aCGCGgcGGCAGAgAUGCCCucuGCGGCa- -3'
miRNA:   3'- gGCGU--CCGUCUgUACGGGu--CGUCGca -5'
24398 5' -59.2 NC_005264.1 + 116404 0.74 0.347246
Target:  5'- gCCGCAGGCcGACGUcgagcGCagGGCGGCGUg -3'
miRNA:   3'- -GGCGUCCGuCUGUA-----CGggUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 72467 0.73 0.370627
Target:  5'- gCCGCcGGuCGGAuCGUGUaCCGGCAGCGUc -3'
miRNA:   3'- -GGCGuCC-GUCU-GUACG-GGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 101015 0.73 0.395061
Target:  5'- gCGCAGGCgagccAGGCAcUGCCCGGCGaugcccGCGg -3'
miRNA:   3'- gGCGUCCG-----UCUGU-ACGGGUCGU------CGCa -5'
24398 5' -59.2 NC_005264.1 + 57989 0.72 0.420512
Target:  5'- cCCGCGcGGCGGcCGUgGCUCAGCGGCc- -3'
miRNA:   3'- -GGCGU-CCGUCuGUA-CGGGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 146406 0.72 0.420512
Target:  5'- cCCGCGGGCAGGCc--CCgCGGCAGuCGa -3'
miRNA:   3'- -GGCGUCCGUCUGuacGG-GUCGUC-GCa -5'
24398 5' -59.2 NC_005264.1 + 140335 0.71 0.483533
Target:  5'- cCUGCGGGggccCAGAgAUGCCC-GCAGUGa -3'
miRNA:   3'- -GGCGUCC----GUCUgUACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 126103 0.71 0.492909
Target:  5'- gCCaGUAGGCGGGCAaggaaUGCgCGGCGGCu- -3'
miRNA:   3'- -GG-CGUCCGUCUGU-----ACGgGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 79400 0.71 0.501419
Target:  5'- gCCGCGGGCGuGGCGagGCCgCGGCggaacccAGCGUg -3'
miRNA:   3'- -GGCGUCCGU-CUGUa-CGG-GUCG-------UCGCA- -5'
24398 5' -59.2 NC_005264.1 + 109907 0.7 0.511905
Target:  5'- gCCGCGGGCGcGGCcaugcaAUGCCCcucgaAGUGGCGg -3'
miRNA:   3'- -GGCGUCCGU-CUG------UACGGG-----UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 29115 0.7 0.531198
Target:  5'- gCCGCaaGGGCuGuCGUGCCagaGGCAGCa- -3'
miRNA:   3'- -GGCG--UCCGuCuGUACGGg--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 12442 0.7 0.550748
Target:  5'- gCGCGGuGCGGuCuaaagGCCCGGCAGgCGUc -3'
miRNA:   3'- gGCGUC-CGUCuGua---CGGGUCGUC-GCA- -5'
24398 5' -59.2 NC_005264.1 + 131469 0.7 0.550748
Target:  5'- gCGCGGuGCGGuCuaaagGCCCGGCAGgCGUc -3'
miRNA:   3'- gGCGUC-CGUCuGua---CGGGUCGUC-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.