miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 24363 0.69 0.570512
Target:  5'- gCCGCucuGGCAuGACcgGCuucgcggcucccCCGGCGGCGa -3'
miRNA:   3'- -GGCGu--CCGU-CUGuaCG------------GGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 47932 0.69 0.58046
Target:  5'- aCGCAGGCggaGGACGgcgaGaCCCGGUccAGCGUg -3'
miRNA:   3'- gGCGUCCG---UCUGUa---C-GGGUCG--UCGCA- -5'
24398 5' -59.2 NC_005264.1 + 124727 0.69 0.590444
Target:  5'- gCGCGGGCA-AC--GCCUGGCGGCGg -3'
miRNA:   3'- gGCGUCCGUcUGuaCGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 5700 0.69 0.590444
Target:  5'- gCGCGGGCA-AC--GCCUGGCGGCGg -3'
miRNA:   3'- gGCGUCCGUcUGuaCGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 53289 0.69 0.600458
Target:  5'- gCGCGGGCuucggGGGCAacgggaagucUGCCCAGgGGCu- -3'
miRNA:   3'- gGCGUCCG-----UCUGU----------ACGGGUCgUCGca -5'
24398 5' -59.2 NC_005264.1 + 45162 0.69 0.600458
Target:  5'- gCGgAGGCAGGagaGCgCGGCAGCGa -3'
miRNA:   3'- gGCgUCCGUCUguaCGgGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 61811 0.69 0.600458
Target:  5'- gCCGCGGGCaucgccGGGCAgUGCCUGGCucgccuGCGc -3'
miRNA:   3'- -GGCGUCCG------UCUGU-ACGGGUCGu-----CGCa -5'
24398 5' -59.2 NC_005264.1 + 148737 0.69 0.600458
Target:  5'- -gGUAuGCAGAgCcgGCCCAGCAGcCGUa -3'
miRNA:   3'- ggCGUcCGUCU-GuaCGGGUCGUC-GCA- -5'
24398 5' -59.2 NC_005264.1 + 4325 0.68 0.630605
Target:  5'- aCCaCAGcGCAGGCcUGCCCcuGGCGGCu- -3'
miRNA:   3'- -GGcGUC-CGUCUGuACGGG--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 123352 0.68 0.630605
Target:  5'- aCCaCAGcGCAGGCcUGCCCcuGGCGGCu- -3'
miRNA:   3'- -GGcGUC-CGUCUGuACGGG--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 91887 0.68 0.630605
Target:  5'- -aGCGGGguGGuugGCCgCGGCAGCGa -3'
miRNA:   3'- ggCGUCCguCUguaCGG-GUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 129593 0.68 0.640667
Target:  5'- uCUGCAGGCGcuGCG-GCgCGGCGGCGa -3'
miRNA:   3'- -GGCGUCCGUc-UGUaCGgGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 98506 0.68 0.649717
Target:  5'- gCCGgAGGCGccGACGggggGCCUcagucuuGGCAGCGg -3'
miRNA:   3'- -GGCgUCCGU--CUGUa---CGGG-------UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 109707 0.68 0.650722
Target:  5'- gCCGC-GGCAGAU-UGCCCGGCcuccucGGCc- -3'
miRNA:   3'- -GGCGuCCGUCUGuACGGGUCG------UCGca -5'
24398 5' -59.2 NC_005264.1 + 111771 0.68 0.650722
Target:  5'- -aGCAGGCuAGGCG-GCCUAGaGGCGa -3'
miRNA:   3'- ggCGUCCG-UCUGUaCGGGUCgUCGCa -5'
24398 5' -59.2 NC_005264.1 + 2639 0.68 0.660762
Target:  5'- -aGCGGGCAGGuugcGCUCuGCAGCGg -3'
miRNA:   3'- ggCGUCCGUCUgua-CGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 49141 0.68 0.660762
Target:  5'- aCGUucaAGGUgcaAGACAUGCCCcacAGCGGCc- -3'
miRNA:   3'- gGCG---UCCG---UCUGUACGGG---UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 66193 0.68 0.660762
Target:  5'- cCCGCAucGGCGGGCGgugcGCCUccgcGGcCAGCGa -3'
miRNA:   3'- -GGCGU--CCGUCUGUa---CGGG----UC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 157361 0.68 0.670781
Target:  5'- -gGCGGGCccuggccGugAUGCUgGGCGGCGg -3'
miRNA:   3'- ggCGUCCGu------CugUACGGgUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 38334 0.68 0.670781
Target:  5'- -gGCGGGCccuggccGugAUGCUgGGCGGCGg -3'
miRNA:   3'- ggCGUCCGu------CugUACGGgUCGUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.