miRNA display CGI


Results 61 - 80 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 3986 0.67 0.717321
Target:  5'- aCCGCcagcaGGGCGGcACAUGCCUccucgcccaccaggGGCuuGGCGg -3'
miRNA:   3'- -GGCG-----UCCGUC-UGUACGGG--------------UCG--UCGCa -5'
24398 5' -59.2 NC_005264.1 + 157872 0.67 0.720248
Target:  5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3'
miRNA:   3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 26365 0.67 0.720248
Target:  5'- gCCGC-GGCAGGC-UGCgCGGCGcCGUc -3'
miRNA:   3'- -GGCGuCCGUCUGuACGgGUCGUcGCA- -5'
24398 5' -59.2 NC_005264.1 + 38846 0.67 0.720248
Target:  5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3'
miRNA:   3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 135674 0.67 0.720248
Target:  5'- gCUGCGGGCugauaauguuAGACAUGCUUAGCAa--- -3'
miRNA:   3'- -GGCGUCCG----------UCUGUACGGGUCGUcgca -5'
24398 5' -59.2 NC_005264.1 + 148899 0.67 0.729957
Target:  5'- gCCGCGuGGCauAGACuUGCUgCGGCAGCu- -3'
miRNA:   3'- -GGCGU-CCG--UCUGuACGG-GUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 99387 0.67 0.729957
Target:  5'- uCCGCAacGGCGGAgcggggUAUGCCaGGCAaGCGa -3'
miRNA:   3'- -GGCGU--CCGUCU------GUACGGgUCGU-CGCa -5'
24398 5' -59.2 NC_005264.1 + 75727 0.67 0.729957
Target:  5'- cCCGCGGGCgccggAGGCcaGUCUGGguGCGUu -3'
miRNA:   3'- -GGCGUCCG-----UCUGuaCGGGUCguCGCA- -5'
24398 5' -59.2 NC_005264.1 + 124772 0.67 0.739585
Target:  5'- aCgGCGGGUAGGCAUugugagagcggcGCCUuccacugacaAGCGGCGc -3'
miRNA:   3'- -GgCGUCCGUCUGUA------------CGGG----------UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 70675 0.67 0.739585
Target:  5'- gCCGCcGGCAGGCAauuuuuacGCCC-GCGGgCGa -3'
miRNA:   3'- -GGCGuCCGUCUGUa-------CGGGuCGUC-GCa -5'
24398 5' -59.2 NC_005264.1 + 84610 0.67 0.739585
Target:  5'- cCCGCAaggauGCAGcguugcuccguACGUGCCCcuGGCGGUGUc -3'
miRNA:   3'- -GGCGUc----CGUC-----------UGUACGGG--UCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 67630 0.67 0.739585
Target:  5'- aCGCGGGCgcAGGgGUGUCCuGC-GCGg -3'
miRNA:   3'- gGCGUCCG--UCUgUACGGGuCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 101315 0.66 0.749121
Target:  5'- gCC-CAGcGCGauaauCAUGCCCAGguGCGg -3'
miRNA:   3'- -GGcGUC-CGUcu---GUACGGGUCguCGCa -5'
24398 5' -59.2 NC_005264.1 + 123012 0.66 0.755738
Target:  5'- aCCGCcaagcaGGGCGGcACAUGCCUccucgcccaccaggGGCuuGGCGg -3'
miRNA:   3'- -GGCG------UCCGUC-UGUACGGG--------------UCG--UCGCa -5'
24398 5' -59.2 NC_005264.1 + 116916 0.66 0.758558
Target:  5'- uUCGCGGuaccaguugggaGCAGAU-UGCCgCGGCGGCGc -3'
miRNA:   3'- -GGCGUC------------CGUCUGuACGG-GUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 142355 0.66 0.758558
Target:  5'- aCCGCAGGCaaaagGGAuucCAUGCCCucccauGC-GCGc -3'
miRNA:   3'- -GGCGUCCG-----UCU---GUACGGGu-----CGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 158573 0.66 0.758558
Target:  5'- aUGCAGGCcgaacAGACucgcUGCgCGGCGGCa- -3'
miRNA:   3'- gGCGUCCG-----UCUGu---ACGgGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 68019 0.66 0.758558
Target:  5'- gCCGCGGagcgccaaagaGCGGAuaaccgcuucCGUGCCCgacgaGGCGGCGa -3'
miRNA:   3'- -GGCGUC-----------CGUCU----------GUACGGG-----UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 40308 0.66 0.758558
Target:  5'- gCUGCGcGUAGACGgcgaGCgCAGCAGUGUc -3'
miRNA:   3'- -GGCGUcCGUCUGUa---CGgGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 89072 0.66 0.76417
Target:  5'- cUCGguGGCGGACAugauuuuuuauuugUGCCgAuuaggccGCGGCGg -3'
miRNA:   3'- -GGCguCCGUCUGU--------------ACGGgU-------CGUCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.