Results 41 - 60 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 99387 | 0.67 | 0.729957 |
Target: 5'- uCCGCAacGGCGGAgcggggUAUGCCaGGCAaGCGa -3' miRNA: 3'- -GGCGU--CCGUCU------GUACGGgUCGU-CGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 135674 | 0.67 | 0.720248 |
Target: 5'- gCUGCGGGCugauaauguuAGACAUGCUUAGCAa--- -3' miRNA: 3'- -GGCGUCCG----------UCUGUACGGGUCGUcgca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 38846 | 0.67 | 0.720248 |
Target: 5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3' miRNA: 3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 26365 | 0.67 | 0.720248 |
Target: 5'- gCCGC-GGCAGGC-UGCgCGGCGcCGUc -3' miRNA: 3'- -GGCGuCCGUCUGuACGgGUCGUcGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 157872 | 0.67 | 0.720248 |
Target: 5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3' miRNA: 3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 3986 | 0.67 | 0.717321 |
Target: 5'- aCCGCcagcaGGGCGGcACAUGCCUccucgcccaccaggGGCuuGGCGg -3' miRNA: 3'- -GGCG-----UCCGUC-UGUACGGG--------------UCG--UCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 68259 | 0.67 | 0.714387 |
Target: 5'- gCCGCGGGCGGccuGCugcUGCcgccucuuugcguccCCAGCGGCa- -3' miRNA: 3'- -GGCGUCCGUC---UGu--ACG---------------GGUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 82798 | 0.67 | 0.710466 |
Target: 5'- uCCGCuacGGC--ACAUGCCCuAGCGGgGa -3' miRNA: 3'- -GGCGu--CCGucUGUACGGG-UCGUCgCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 41005 | 0.67 | 0.710466 |
Target: 5'- cCCGUuuAGGUGGGCu--CCCAgGCAGCGg -3' miRNA: 3'- -GGCG--UCCGUCUGuacGGGU-CGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 77798 | 0.67 | 0.710466 |
Target: 5'- aCCGCGGcGCAGACG-GCauugaCGGC-GCGg -3' miRNA: 3'- -GGCGUC-CGUCUGUaCGg----GUCGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 160032 | 0.67 | 0.710466 |
Target: 5'- cCCGUuuAGGUGGGCu--CCCAgGCAGCGg -3' miRNA: 3'- -GGCG--UCCGUCUGuacGGGU-CGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 92675 | 0.67 | 0.710466 |
Target: 5'- cUCGCAGGUauugcgguagugAGGCGccGCCgCGGCAGCa- -3' miRNA: 3'- -GGCGUCCG------------UCUGUa-CGG-GUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 31870 | 0.67 | 0.700619 |
Target: 5'- cUCGuCAGGCaaguGGACuuucacCCCAGCGGCGa -3' miRNA: 3'- -GGC-GUCCG----UCUGuac---GGGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 93769 | 0.67 | 0.700619 |
Target: 5'- uUGCGGuGCGcGACGacgaugaccUGCCCGGCGGCc- -3' miRNA: 3'- gGCGUC-CGU-CUGU---------ACGGGUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 59466 | 0.67 | 0.700619 |
Target: 5'- cCCGCGcGGCAGGCAUGacgaCUGGCA-UGUa -3' miRNA: 3'- -GGCGU-CCGUCUGUACg---GGUCGUcGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 89546 | 0.67 | 0.700619 |
Target: 5'- gCGCGGGCAG---UGUCCGGCgAGCu- -3' miRNA: 3'- gGCGUCCGUCuguACGGGUCG-UCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 150896 | 0.67 | 0.700619 |
Target: 5'- cUCGuCAGGCaaguGGACuuucacCCCAGCGGCGa -3' miRNA: 3'- -GGC-GUCCG----UCUGuac---GGGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 92159 | 0.67 | 0.690717 |
Target: 5'- cCCGCGGGCGuaaaaauUGCCUgccGGCGGCGc -3' miRNA: 3'- -GGCGUCCGUcugu---ACGGG---UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 53255 | 0.67 | 0.689725 |
Target: 5'- cCCGCGGGCGcgugucuGGCuugcUGUCCcGCGGCGc -3' miRNA: 3'- -GGCGUCCGU-------CUGu---ACGGGuCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 125687 | 0.68 | 0.680768 |
Target: 5'- -aGCuccGGCAGAgAUccugGCgCCAGCAGCGa -3' miRNA: 3'- ggCGu--CCGUCUgUA----CG-GGUCGUCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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