Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 45162 | 0.69 | 0.600458 |
Target: 5'- gCGgAGGCAGGagaGCgCGGCAGCGa -3' miRNA: 3'- gGCgUCCGUCUguaCGgGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 53289 | 0.69 | 0.600458 |
Target: 5'- gCGCGGGCuucggGGGCAacgggaagucUGCCCAGgGGCu- -3' miRNA: 3'- gGCGUCCG-----UCUGU----------ACGGGUCgUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 124727 | 0.69 | 0.590444 |
Target: 5'- gCGCGGGCA-AC--GCCUGGCGGCGg -3' miRNA: 3'- gGCGUCCGUcUGuaCGGGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 5700 | 0.69 | 0.590444 |
Target: 5'- gCGCGGGCA-AC--GCCUGGCGGCGg -3' miRNA: 3'- gGCGUCCGUcUGuaCGGGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 47932 | 0.69 | 0.58046 |
Target: 5'- aCGCAGGCggaGGACGgcgaGaCCCGGUccAGCGUg -3' miRNA: 3'- gGCGUCCG---UCUGUa---C-GGGUCG--UCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 24363 | 0.69 | 0.570512 |
Target: 5'- gCCGCucuGGCAuGACcgGCuucgcggcucccCCGGCGGCGa -3' miRNA: 3'- -GGCGu--CCGU-CUGuaCG------------GGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 131469 | 0.7 | 0.550748 |
Target: 5'- gCGCGGuGCGGuCuaaagGCCCGGCAGgCGUc -3' miRNA: 3'- gGCGUC-CGUCuGua---CGGGUCGUC-GCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 12442 | 0.7 | 0.550748 |
Target: 5'- gCGCGGuGCGGuCuaaagGCCCGGCAGgCGUc -3' miRNA: 3'- gGCGUC-CGUCuGua---CGGGUCGUC-GCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 29115 | 0.7 | 0.531198 |
Target: 5'- gCCGCaaGGGCuGuCGUGCCagaGGCAGCa- -3' miRNA: 3'- -GGCG--UCCGuCuGUACGGg--UCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 109907 | 0.7 | 0.511905 |
Target: 5'- gCCGCGGGCGcGGCcaugcaAUGCCCcucgaAGUGGCGg -3' miRNA: 3'- -GGCGUCCGU-CUG------UACGGG-----UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 79400 | 0.71 | 0.501419 |
Target: 5'- gCCGCGGGCGuGGCGagGCCgCGGCggaacccAGCGUg -3' miRNA: 3'- -GGCGUCCGU-CUGUa-CGG-GUCG-------UCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 126103 | 0.71 | 0.492909 |
Target: 5'- gCCaGUAGGCGGGCAaggaaUGCgCGGCGGCu- -3' miRNA: 3'- -GG-CGUCCGUCUGU-----ACGgGUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 140335 | 0.71 | 0.483533 |
Target: 5'- cCUGCGGGggccCAGAgAUGCCC-GCAGUGa -3' miRNA: 3'- -GGCGUCC----GUCUgUACGGGuCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 57989 | 0.72 | 0.420512 |
Target: 5'- cCCGCGcGGCGGcCGUgGCUCAGCGGCc- -3' miRNA: 3'- -GGCGU-CCGUCuGUA-CGGGUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 146406 | 0.72 | 0.420512 |
Target: 5'- cCCGCGGGCAGGCc--CCgCGGCAGuCGa -3' miRNA: 3'- -GGCGUCCGUCUGuacGG-GUCGUC-GCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 101015 | 0.73 | 0.395061 |
Target: 5'- gCGCAGGCgagccAGGCAcUGCCCGGCGaugcccGCGg -3' miRNA: 3'- gGCGUCCG-----UCUGU-ACGGGUCGU------CGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 72467 | 0.73 | 0.370627 |
Target: 5'- gCCGCcGGuCGGAuCGUGUaCCGGCAGCGUc -3' miRNA: 3'- -GGCGuCC-GUCU-GUACG-GGUCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 116404 | 0.74 | 0.347246 |
Target: 5'- gCCGCAGGCcGACGUcgagcGCagGGCGGCGUg -3' miRNA: 3'- -GGCGUCCGuCUGUA-----CGggUCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 83732 | 0.75 | 0.303715 |
Target: 5'- aCGCGgcGGCAGAgAUGCCCucuGCGGCa- -3' miRNA: 3'- gGCGU--CCGUCUgUACGGGu--CGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 94598 | 0.75 | 0.296881 |
Target: 5'- cCCGCGGcGCGGGCAUGgCUuggcgguGCGGCGUg -3' miRNA: 3'- -GGCGUC-CGUCUGUACgGGu------CGUCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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