miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 2639 0.68 0.660762
Target:  5'- -aGCGGGCAGGuugcGCUCuGCAGCGg -3'
miRNA:   3'- ggCGUCCGUCUgua-CGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 3658 0.66 0.7771
Target:  5'- gCCGCcgucucgacgauGGGCGGcCGU-CUCGGCGGCGa -3'
miRNA:   3'- -GGCG------------UCCGUCuGUAcGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 3986 0.67 0.717321
Target:  5'- aCCGCcagcaGGGCGGcACAUGCCUccucgcccaccaggGGCuuGGCGg -3'
miRNA:   3'- -GGCG-----UCCGUC-UGUACGGG--------------UCG--UCGCa -5'
24398 5' -59.2 NC_005264.1 + 4325 0.68 0.630605
Target:  5'- aCCaCAGcGCAGGCcUGCCCcuGGCGGCu- -3'
miRNA:   3'- -GGcGUC-CGUCUGuACGGG--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 4589 0.66 0.767888
Target:  5'- aCGCAGGCccuccccGcCAgcGCCgCGGCGGCGUa -3'
miRNA:   3'- gGCGUCCGu------CuGUa-CGG-GUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 5700 0.69 0.590444
Target:  5'- gCGCGGGCA-AC--GCCUGGCGGCGg -3'
miRNA:   3'- gGCGUCCGUcUGuaCGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 6660 0.68 0.680768
Target:  5'- -aGCuccGGCAGAgAUccugGCgCCAGCAGCGa -3'
miRNA:   3'- ggCGu--CCGUCUgUA----CG-GGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 8296 0.68 0.680768
Target:  5'- cCCGUGGGCgacggGGGCAccUGCgCC-GCGGCGUc -3'
miRNA:   3'- -GGCGUCCG-----UCUGU--ACG-GGuCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 12442 0.7 0.550748
Target:  5'- gCGCGGuGCGGuCuaaagGCCCGGCAGgCGUc -3'
miRNA:   3'- gGCGUC-CGUCuGua---CGGGUCGUC-GCA- -5'
24398 5' -59.2 NC_005264.1 + 18618 0.66 0.786188
Target:  5'- aCCGCA-GCGGACGUGUuuGuGCAGUu- -3'
miRNA:   3'- -GGCGUcCGUCUGUACGggU-CGUCGca -5'
24398 5' -59.2 NC_005264.1 + 24363 0.69 0.570512
Target:  5'- gCCGCucuGGCAuGACcgGCuucgcggcucccCCGGCGGCGa -3'
miRNA:   3'- -GGCGu--CCGU-CUGuaCG------------GGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 24916 0.66 0.767888
Target:  5'- gUCGCuGGGguGACGcgaucuuaucGCCCGGCuGCGg -3'
miRNA:   3'- -GGCG-UCCguCUGUa---------CGGGUCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 26365 0.67 0.720248
Target:  5'- gCCGC-GGCAGGC-UGCgCGGCGcCGUc -3'
miRNA:   3'- -GGCGuCCGUCUGuACGgGUCGUcGCA- -5'
24398 5' -59.2 NC_005264.1 + 29115 0.7 0.531198
Target:  5'- gCCGCaaGGGCuGuCGUGCCagaGGCAGCa- -3'
miRNA:   3'- -GGCG--UCCGuCuGUACGGg--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 31813 0.66 0.785285
Target:  5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3'
miRNA:   3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 31870 0.67 0.700619
Target:  5'- cUCGuCAGGCaaguGGACuuucacCCCAGCGGCGa -3'
miRNA:   3'- -GGC-GUCCG----UCUGuac---GGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 34093 0.78 0.203388
Target:  5'- gCCGC-GGCGGGCAcaaugGCUCAGCGGCGc -3'
miRNA:   3'- -GGCGuCCGUCUGUa----CGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 36122 0.66 0.776185
Target:  5'- cUCGCcGGCcGACGauuucuuUGCCCAcGUAGCGc -3'
miRNA:   3'- -GGCGuCCGuCUGU-------ACGGGU-CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 38334 0.68 0.670781
Target:  5'- -gGCGGGCccuggccGugAUGCUgGGCGGCGg -3'
miRNA:   3'- ggCGUCCGu------CugUACGGgUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 38846 0.67 0.720248
Target:  5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3'
miRNA:   3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.