Results 41 - 60 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 67630 | 0.67 | 0.739585 |
Target: 5'- aCGCGGGCgcAGGgGUGUCCuGC-GCGg -3' miRNA: 3'- gGCGUCCG--UCUgUACGGGuCGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 68019 | 0.66 | 0.758558 |
Target: 5'- gCCGCGGagcgccaaagaGCGGAuaaccgcuucCGUGCCCgacgaGGCGGCGa -3' miRNA: 3'- -GGCGUC-----------CGUCU----------GUACGGG-----UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 68259 | 0.67 | 0.714387 |
Target: 5'- gCCGCGGGCGGccuGCugcUGCcgccucuuugcguccCCAGCGGCa- -3' miRNA: 3'- -GGCGUCCGUC---UGu--ACG---------------GGUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 70675 | 0.67 | 0.739585 |
Target: 5'- gCCGCcGGCAGGCAauuuuuacGCCC-GCGGgCGa -3' miRNA: 3'- -GGCGuCCGUCUGUa-------CGGGuCGUC-GCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 71628 | 0.66 | 0.795141 |
Target: 5'- gCgGC-GGCAGAgAUaGCCCAGUGcGCGa -3' miRNA: 3'- -GgCGuCCGUCUgUA-CGGGUCGU-CGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 72467 | 0.73 | 0.370627 |
Target: 5'- gCCGCcGGuCGGAuCGUGUaCCGGCAGCGUc -3' miRNA: 3'- -GGCGuCC-GUCU-GUACG-GGUCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 75727 | 0.67 | 0.729957 |
Target: 5'- cCCGCGGGCgccggAGGCcaGUCUGGguGCGUu -3' miRNA: 3'- -GGCGUCCG-----UCUGuaCGGGUCguCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 77798 | 0.67 | 0.710466 |
Target: 5'- aCCGCGGcGCAGACG-GCauugaCGGC-GCGg -3' miRNA: 3'- -GGCGUC-CGUCUGUaCGg----GUCGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 78608 | 0.66 | 0.7771 |
Target: 5'- aCGC-GGUAGGCAaGCUC-GCGGCGc -3' miRNA: 3'- gGCGuCCGUCUGUaCGGGuCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 79400 | 0.71 | 0.501419 |
Target: 5'- gCCGCGGGCGuGGCGagGCCgCGGCggaacccAGCGUg -3' miRNA: 3'- -GGCGUCCGU-CUGUa-CGG-GUCG-------UCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 79692 | 0.66 | 0.783475 |
Target: 5'- cCCGCgacagacaccaugaGGGCAGACGcGCCUccGCGGCc- -3' miRNA: 3'- -GGCG--------------UCCGUCUGUaCGGGu-CGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 82798 | 0.67 | 0.710466 |
Target: 5'- uCCGCuacGGC--ACAUGCCCuAGCGGgGa -3' miRNA: 3'- -GGCGu--CCGucUGUACGGG-UCGUCgCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 83732 | 0.75 | 0.303715 |
Target: 5'- aCGCGgcGGCAGAgAUGCCCucuGCGGCa- -3' miRNA: 3'- gGCGU--CCGUCUgUACGGGu--CGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 84610 | 0.67 | 0.739585 |
Target: 5'- cCCGCAaggauGCAGcguugcuccguACGUGCCCcuGGCGGUGUc -3' miRNA: 3'- -GGCGUc----CGUC-----------UGUACGGG--UCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 89072 | 0.66 | 0.76417 |
Target: 5'- cUCGguGGCGGACAugauuuuuuauuugUGCCgAuuaggccGCGGCGg -3' miRNA: 3'- -GGCguCCGUCUGU--------------ACGGgU-------CGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 89546 | 0.67 | 0.700619 |
Target: 5'- gCGCGGGCAG---UGUCCGGCgAGCu- -3' miRNA: 3'- gGCGUCCGUCuguACGGGUCG-UCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 91887 | 0.68 | 0.630605 |
Target: 5'- -aGCGGGguGGuugGCCgCGGCAGCGa -3' miRNA: 3'- ggCGUCCguCUguaCGG-GUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 92159 | 0.67 | 0.690717 |
Target: 5'- cCCGCGGGCGuaaaaauUGCCUgccGGCGGCGc -3' miRNA: 3'- -GGCGUCCGUcugu---ACGGG---UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 92675 | 0.67 | 0.710466 |
Target: 5'- cUCGCAGGUauugcgguagugAGGCGccGCCgCGGCAGCa- -3' miRNA: 3'- -GGCGUCCG------------UCUGUa-CGG-GUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 93769 | 0.67 | 0.700619 |
Target: 5'- uUGCGGuGCGcGACGacgaugaccUGCCCGGCGGCc- -3' miRNA: 3'- gGCGUC-CGU-CUGU---------ACGGGUCGUCGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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