miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 94598 0.75 0.296881
Target:  5'- cCCGCGGcGCGGGCAUGgCUuggcgguGCGGCGUg -3'
miRNA:   3'- -GGCGUC-CGUCUGUACgGGu------CGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 97464 0.66 0.7771
Target:  5'- gUCGCcuGCgAGACucuaCCCGGCGGCGUc -3'
miRNA:   3'- -GGCGucCG-UCUGuac-GGGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 98411 0.77 0.229497
Target:  5'- gCCGC-GGCAGACgucaucgccGUGCCC-GCGGCGUc -3'
miRNA:   3'- -GGCGuCCGUCUG---------UACGGGuCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 98506 0.68 0.649717
Target:  5'- gCCGgAGGCGccGACGggggGCCUcagucuuGGCAGCGg -3'
miRNA:   3'- -GGCgUCCGU--CUGUa---CGGG-------UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 99387 0.67 0.729957
Target:  5'- uCCGCAacGGCGGAgcggggUAUGCCaGGCAaGCGa -3'
miRNA:   3'- -GGCGU--CCGUCU------GUACGGgUCGU-CGCa -5'
24398 5' -59.2 NC_005264.1 + 101015 0.73 0.395061
Target:  5'- gCGCAGGCgagccAGGCAcUGCCCGGCGaugcccGCGg -3'
miRNA:   3'- gGCGUCCG-----UCUGU-ACGGGUCGU------CGCa -5'
24398 5' -59.2 NC_005264.1 + 101315 0.66 0.749121
Target:  5'- gCC-CAGcGCGauaauCAUGCCCAGguGCGg -3'
miRNA:   3'- -GGcGUC-CGUcu---GUACGGGUCguCGCa -5'
24398 5' -59.2 NC_005264.1 + 109707 0.68 0.650722
Target:  5'- gCCGC-GGCAGAU-UGCCCGGCcuccucGGCc- -3'
miRNA:   3'- -GGCGuCCGUCUGuACGGGUCG------UCGca -5'
24398 5' -59.2 NC_005264.1 + 109907 0.7 0.511905
Target:  5'- gCCGCGGGCGcGGCcaugcaAUGCCCcucgaAGUGGCGg -3'
miRNA:   3'- -GGCGUCCGU-CUG------UACGGG-----UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 111771 0.68 0.650722
Target:  5'- -aGCAGGCuAGGCG-GCCUAGaGGCGa -3'
miRNA:   3'- ggCGUCCG-UCUGUaCGGGUCgUCGCa -5'
24398 5' -59.2 NC_005264.1 + 114614 1.08 0.001653
Target:  5'- gCCGCAGGCAGACAUGCCCAGCAGCGUc -3'
miRNA:   3'- -GGCGUCCGUCUGUACGGGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 116404 0.74 0.347246
Target:  5'- gCCGCAGGCcGACGUcgagcGCagGGCGGCGUg -3'
miRNA:   3'- -GGCGUCCGuCUGUA-----CGggUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 116916 0.66 0.758558
Target:  5'- uUCGCGGuaccaguugggaGCAGAU-UGCCgCGGCGGCGc -3'
miRNA:   3'- -GGCGUC------------CGUCUGuACGG-GUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 117867 0.66 0.786188
Target:  5'- -gGCAuGGCGGACAgcuuuucccGCCCGGCAucuGUGa -3'
miRNA:   3'- ggCGU-CCGUCUGUa--------CGGGUCGU---CGCa -5'
24398 5' -59.2 NC_005264.1 + 122685 0.66 0.7771
Target:  5'- gCCGCcgucucgacgauGGGCGGcCGU-CUCGGCGGCGa -3'
miRNA:   3'- -GGCG------------UCCGUCuGUAcGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 123012 0.66 0.755738
Target:  5'- aCCGCcaagcaGGGCGGcACAUGCCUccucgcccaccaggGGCuuGGCGg -3'
miRNA:   3'- -GGCG------UCCGUC-UGUACGGG--------------UCG--UCGCa -5'
24398 5' -59.2 NC_005264.1 + 123352 0.68 0.630605
Target:  5'- aCCaCAGcGCAGGCcUGCCCcuGGCGGCu- -3'
miRNA:   3'- -GGcGUC-CGUCUGuACGGG--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 123616 0.66 0.767888
Target:  5'- aCGCAGGCccuccccGcCAgcGCCgCGGCGGCGUa -3'
miRNA:   3'- gGCGUCCGu------CuGUa-CGG-GUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 124727 0.69 0.590444
Target:  5'- gCGCGGGCA-AC--GCCUGGCGGCGg -3'
miRNA:   3'- gGCGUCCGUcUGuaCGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 124772 0.67 0.739585
Target:  5'- aCgGCGGGUAGGCAUugugagagcggcGCCUuccacugacaAGCGGCGc -3'
miRNA:   3'- -GgCGUCCGUCUGUA------------CGGG----------UCGUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.