Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 125687 | 0.68 | 0.680768 |
Target: 5'- -aGCuccGGCAGAgAUccugGCgCCAGCAGCGa -3' miRNA: 3'- ggCGu--CCGUCUgUA----CG-GGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 126103 | 0.71 | 0.492909 |
Target: 5'- gCCaGUAGGCGGGCAaggaaUGCgCGGCGGCu- -3' miRNA: 3'- -GG-CGUCCGUCUGU-----ACGgGUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 127201 | 0.76 | 0.246485 |
Target: 5'- gCGCAGGUAcaACGUGCCCucGCAGCGg -3' miRNA: 3'- gGCGUCCGUc-UGUACGGGu-CGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 127323 | 0.68 | 0.680768 |
Target: 5'- cCCGUGGGCgacggGGGCAccUGCgCC-GCGGCGUc -3' miRNA: 3'- -GGCGUCCG-----UCUGU--ACG-GGuCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 129593 | 0.68 | 0.640667 |
Target: 5'- uCUGCAGGCGcuGCG-GCgCGGCGGCGa -3' miRNA: 3'- -GGCGUCCGUc-UGUaCGgGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 131469 | 0.7 | 0.550748 |
Target: 5'- gCGCGGuGCGGuCuaaagGCCCGGCAGgCGUc -3' miRNA: 3'- gGCGUC-CGUCuGua---CGGGUCGUC-GCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 133261 | 0.77 | 0.218729 |
Target: 5'- gCCGCAGGCAaACAgGCCgAGCGGCa- -3' miRNA: 3'- -GGCGUCCGUcUGUaCGGgUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 135674 | 0.67 | 0.720248 |
Target: 5'- gCUGCGGGCugauaauguuAGACAUGCUUAGCAa--- -3' miRNA: 3'- -GGCGUCCG----------UCUGUACGGGUCGUcgca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 138462 | 0.66 | 0.77435 |
Target: 5'- gCCGCcGGgGGAgccgcgaagccgguCAUGCCagAGCGGCGg -3' miRNA: 3'- -GGCGuCCgUCU--------------GUACGGg-UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 139427 | 0.68 | 0.680768 |
Target: 5'- aCCGCuGGCGuacGCGUGCUCGGCcgucacaagagGGCGg -3' miRNA: 3'- -GGCGuCCGUc--UGUACGGGUCG-----------UCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 140335 | 0.71 | 0.483533 |
Target: 5'- cCUGCGGGggccCAGAgAUGCCC-GCAGUGa -3' miRNA: 3'- -GGCGUCC----GUCUgUACGGGuCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 142355 | 0.66 | 0.758558 |
Target: 5'- aCCGCAGGCaaaagGGAuucCAUGCCCucccauGC-GCGc -3' miRNA: 3'- -GGCGUCCG-----UCU---GUACGGGu-----CGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 146406 | 0.72 | 0.420512 |
Target: 5'- cCCGCGGGCAGGCc--CCgCGGCAGuCGa -3' miRNA: 3'- -GGCGUCCGUCUGuacGG-GUCGUC-GCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 146777 | 0.66 | 0.795141 |
Target: 5'- gCCGCGcGGCGGuucUcgGUgCGGCGGUGUg -3' miRNA: 3'- -GGCGU-CCGUCu--GuaCGgGUCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 148737 | 0.69 | 0.600458 |
Target: 5'- -gGUAuGCAGAgCcgGCCCAGCAGcCGUa -3' miRNA: 3'- ggCGUcCGUCU-GuaCGGGUCGUC-GCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 148899 | 0.67 | 0.729957 |
Target: 5'- gCCGCGuGGCauAGACuUGCUgCGGCAGCu- -3' miRNA: 3'- -GGCGU-CCG--UCUGuACGG-GUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 150839 | 0.66 | 0.785285 |
Target: 5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3' miRNA: 3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 150896 | 0.67 | 0.700619 |
Target: 5'- cUCGuCAGGCaaguGGACuuucacCCCAGCGGCGa -3' miRNA: 3'- -GGC-GUCCG----UCUGuac---GGGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 153120 | 0.78 | 0.203388 |
Target: 5'- gCCGC-GGCGGGCAcaaugGCUCAGCGGCGc -3' miRNA: 3'- -GGCGuCCGUCUGUa----CGGGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 157361 | 0.68 | 0.670781 |
Target: 5'- -gGCGGGCccuggccGugAUGCUgGGCGGCGg -3' miRNA: 3'- ggCGUCCGu------CugUACGGgUCGUCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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