miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 161636 0.66 0.795141
Target:  5'- cCCGCAGccauggccGCGGAC--GCCCGGUccgcuGCGUa -3'
miRNA:   3'- -GGCGUC--------CGUCUGuaCGGGUCGu----CGCA- -5'
24398 5' -59.2 NC_005264.1 + 160032 0.67 0.710466
Target:  5'- cCCGUuuAGGUGGGCu--CCCAgGCAGCGg -3'
miRNA:   3'- -GGCG--UCCGUCUGuacGGGU-CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 159314 0.66 0.783475
Target:  5'- gCCGCgucgcgguucgacgAGGCGGACGgcgaggauccccUGCCCcccgccgcguGCGGCGg -3'
miRNA:   3'- -GGCG--------------UCCGUCUGU------------ACGGGu---------CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 158573 0.66 0.758558
Target:  5'- aUGCAGGCcgaacAGACucgcUGCgCGGCGGCa- -3'
miRNA:   3'- gGCGUCCG-----UCUGu---ACGgGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 158512 0.66 0.786188
Target:  5'- gCCGCcagGGGCAGGCcUGCgCuGUGGUGg -3'
miRNA:   3'- -GGCG---UCCGUCUGuACGgGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 157872 0.67 0.720248
Target:  5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3'
miRNA:   3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 157361 0.68 0.670781
Target:  5'- -gGCGGGCccuggccGugAUGCUgGGCGGCGg -3'
miRNA:   3'- ggCGUCCGu------CugUACGGgUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 153120 0.78 0.203388
Target:  5'- gCCGC-GGCGGGCAcaaugGCUCAGCGGCGc -3'
miRNA:   3'- -GGCGuCCGUCUGUa----CGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 150896 0.67 0.700619
Target:  5'- cUCGuCAGGCaaguGGACuuucacCCCAGCGGCGa -3'
miRNA:   3'- -GGC-GUCCG----UCUGuac---GGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 150839 0.66 0.785285
Target:  5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3'
miRNA:   3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 148899 0.67 0.729957
Target:  5'- gCCGCGuGGCauAGACuUGCUgCGGCAGCu- -3'
miRNA:   3'- -GGCGU-CCG--UCUGuACGG-GUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 148737 0.69 0.600458
Target:  5'- -gGUAuGCAGAgCcgGCCCAGCAGcCGUa -3'
miRNA:   3'- ggCGUcCGUCU-GuaCGGGUCGUC-GCA- -5'
24398 5' -59.2 NC_005264.1 + 146777 0.66 0.795141
Target:  5'- gCCGCGcGGCGGuucUcgGUgCGGCGGUGUg -3'
miRNA:   3'- -GGCGU-CCGUCu--GuaCGgGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 146406 0.72 0.420512
Target:  5'- cCCGCGGGCAGGCc--CCgCGGCAGuCGa -3'
miRNA:   3'- -GGCGUCCGUCUGuacGG-GUCGUC-GCa -5'
24398 5' -59.2 NC_005264.1 + 142355 0.66 0.758558
Target:  5'- aCCGCAGGCaaaagGGAuucCAUGCCCucccauGC-GCGc -3'
miRNA:   3'- -GGCGUCCG-----UCU---GUACGGGu-----CGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 140335 0.71 0.483533
Target:  5'- cCUGCGGGggccCAGAgAUGCCC-GCAGUGa -3'
miRNA:   3'- -GGCGUCC----GUCUgUACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 139427 0.68 0.680768
Target:  5'- aCCGCuGGCGuacGCGUGCUCGGCcgucacaagagGGCGg -3'
miRNA:   3'- -GGCGuCCGUc--UGUACGGGUCG-----------UCGCa -5'
24398 5' -59.2 NC_005264.1 + 138462 0.66 0.77435
Target:  5'- gCCGCcGGgGGAgccgcgaagccgguCAUGCCagAGCGGCGg -3'
miRNA:   3'- -GGCGuCCgUCU--------------GUACGGg-UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 135674 0.67 0.720248
Target:  5'- gCUGCGGGCugauaauguuAGACAUGCUUAGCAa--- -3'
miRNA:   3'- -GGCGUCCG----------UCUGUACGGGUCGUcgca -5'
24398 5' -59.2 NC_005264.1 + 133261 0.77 0.218729
Target:  5'- gCCGCAGGCAaACAgGCCgAGCGGCa- -3'
miRNA:   3'- -GGCGUCCGUcUGUaCGGgUCGUCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.