miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 101015 0.73 0.395061
Target:  5'- gCGCAGGCgagccAGGCAcUGCCCGGCGaugcccGCGg -3'
miRNA:   3'- gGCGUCCG-----UCUGU-ACGGGUCGU------CGCa -5'
24398 5' -59.2 NC_005264.1 + 99387 0.67 0.729957
Target:  5'- uCCGCAacGGCGGAgcggggUAUGCCaGGCAaGCGa -3'
miRNA:   3'- -GGCGU--CCGUCU------GUACGGgUCGU-CGCa -5'
24398 5' -59.2 NC_005264.1 + 98506 0.68 0.649717
Target:  5'- gCCGgAGGCGccGACGggggGCCUcagucuuGGCAGCGg -3'
miRNA:   3'- -GGCgUCCGU--CUGUa---CGGG-------UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 98411 0.77 0.229497
Target:  5'- gCCGC-GGCAGACgucaucgccGUGCCC-GCGGCGUc -3'
miRNA:   3'- -GGCGuCCGUCUG---------UACGGGuCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 97464 0.66 0.7771
Target:  5'- gUCGCcuGCgAGACucuaCCCGGCGGCGUc -3'
miRNA:   3'- -GGCGucCG-UCUGuac-GGGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 94598 0.75 0.296881
Target:  5'- cCCGCGGcGCGGGCAUGgCUuggcgguGCGGCGUg -3'
miRNA:   3'- -GGCGUC-CGUCUGUACgGGu------CGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 93769 0.67 0.700619
Target:  5'- uUGCGGuGCGcGACGacgaugaccUGCCCGGCGGCc- -3'
miRNA:   3'- gGCGUC-CGU-CUGU---------ACGGGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 92675 0.67 0.710466
Target:  5'- cUCGCAGGUauugcgguagugAGGCGccGCCgCGGCAGCa- -3'
miRNA:   3'- -GGCGUCCG------------UCUGUa-CGG-GUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 92159 0.67 0.690717
Target:  5'- cCCGCGGGCGuaaaaauUGCCUgccGGCGGCGc -3'
miRNA:   3'- -GGCGUCCGUcugu---ACGGG---UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 91887 0.68 0.630605
Target:  5'- -aGCGGGguGGuugGCCgCGGCAGCGa -3'
miRNA:   3'- ggCGUCCguCUguaCGG-GUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 89546 0.67 0.700619
Target:  5'- gCGCGGGCAG---UGUCCGGCgAGCu- -3'
miRNA:   3'- gGCGUCCGUCuguACGGGUCG-UCGca -5'
24398 5' -59.2 NC_005264.1 + 89072 0.66 0.76417
Target:  5'- cUCGguGGCGGACAugauuuuuuauuugUGCCgAuuaggccGCGGCGg -3'
miRNA:   3'- -GGCguCCGUCUGU--------------ACGGgU-------CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 84610 0.67 0.739585
Target:  5'- cCCGCAaggauGCAGcguugcuccguACGUGCCCcuGGCGGUGUc -3'
miRNA:   3'- -GGCGUc----CGUC-----------UGUACGGG--UCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 83732 0.75 0.303715
Target:  5'- aCGCGgcGGCAGAgAUGCCCucuGCGGCa- -3'
miRNA:   3'- gGCGU--CCGUCUgUACGGGu--CGUCGca -5'
24398 5' -59.2 NC_005264.1 + 82798 0.67 0.710466
Target:  5'- uCCGCuacGGC--ACAUGCCCuAGCGGgGa -3'
miRNA:   3'- -GGCGu--CCGucUGUACGGG-UCGUCgCa -5'
24398 5' -59.2 NC_005264.1 + 79692 0.66 0.783475
Target:  5'- cCCGCgacagacaccaugaGGGCAGACGcGCCUccGCGGCc- -3'
miRNA:   3'- -GGCG--------------UCCGUCUGUaCGGGu-CGUCGca -5'
24398 5' -59.2 NC_005264.1 + 79400 0.71 0.501419
Target:  5'- gCCGCGGGCGuGGCGagGCCgCGGCggaacccAGCGUg -3'
miRNA:   3'- -GGCGUCCGU-CUGUa-CGG-GUCG-------UCGCA- -5'
24398 5' -59.2 NC_005264.1 + 78608 0.66 0.7771
Target:  5'- aCGC-GGUAGGCAaGCUC-GCGGCGc -3'
miRNA:   3'- gGCGuCCGUCUGUaCGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 77798 0.67 0.710466
Target:  5'- aCCGCGGcGCAGACG-GCauugaCGGC-GCGg -3'
miRNA:   3'- -GGCGUC-CGUCUGUaCGg----GUCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 75727 0.67 0.729957
Target:  5'- cCCGCGGGCgccggAGGCcaGUCUGGguGCGUu -3'
miRNA:   3'- -GGCGUCCG-----UCUGuaCGGGUCguCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.