miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 72467 0.73 0.370627
Target:  5'- gCCGCcGGuCGGAuCGUGUaCCGGCAGCGUc -3'
miRNA:   3'- -GGCGuCC-GUCU-GUACG-GGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 71628 0.66 0.795141
Target:  5'- gCgGC-GGCAGAgAUaGCCCAGUGcGCGa -3'
miRNA:   3'- -GgCGuCCGUCUgUA-CGGGUCGU-CGCa -5'
24398 5' -59.2 NC_005264.1 + 70675 0.67 0.739585
Target:  5'- gCCGCcGGCAGGCAauuuuuacGCCC-GCGGgCGa -3'
miRNA:   3'- -GGCGuCCGUCUGUa-------CGGGuCGUC-GCa -5'
24398 5' -59.2 NC_005264.1 + 68259 0.67 0.714387
Target:  5'- gCCGCGGGCGGccuGCugcUGCcgccucuuugcguccCCAGCGGCa- -3'
miRNA:   3'- -GGCGUCCGUC---UGu--ACG---------------GGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 68019 0.66 0.758558
Target:  5'- gCCGCGGagcgccaaagaGCGGAuaaccgcuucCGUGCCCgacgaGGCGGCGa -3'
miRNA:   3'- -GGCGUC-----------CGUCU----------GUACGGG-----UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 67630 0.67 0.739585
Target:  5'- aCGCGGGCgcAGGgGUGUCCuGC-GCGg -3'
miRNA:   3'- gGCGUCCG--UCUgUACGGGuCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 66193 0.68 0.660762
Target:  5'- cCCGCAucGGCGGGCGgugcGCCUccgcGGcCAGCGa -3'
miRNA:   3'- -GGCGU--CCGUCUGUa---CGGG----UC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 65563 0.66 0.776185
Target:  5'- gCGCgAGGCAGcggccacuaccguGCcaagGCCCGGCGGCc- -3'
miRNA:   3'- gGCG-UCCGUC-------------UGua--CGGGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 64599 0.66 0.7771
Target:  5'- aCCgGCgagAGGuUAGACAgcuuuucggugcUGUCCAGCAGCGc -3'
miRNA:   3'- -GG-CG---UCC-GUCUGU------------ACGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 61811 0.69 0.600458
Target:  5'- gCCGCGGGCaucgccGGGCAgUGCCUGGCucgccuGCGc -3'
miRNA:   3'- -GGCGUCCG------UCUGU-ACGGGUCGu-----CGCa -5'
24398 5' -59.2 NC_005264.1 + 59899 0.68 0.670781
Target:  5'- aUCGCGGGCca--GUGCCCuGUGGCGc -3'
miRNA:   3'- -GGCGUCCGucugUACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 59466 0.67 0.700619
Target:  5'- cCCGCGcGGCAGGCAUGacgaCUGGCA-UGUa -3'
miRNA:   3'- -GGCGU-CCGUCUGUACg---GGUCGUcGCA- -5'
24398 5' -59.2 NC_005264.1 + 57989 0.72 0.420512
Target:  5'- cCCGCGcGGCGGcCGUgGCUCAGCGGCc- -3'
miRNA:   3'- -GGCGU-CCGUCuGUA-CGGGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 53289 0.69 0.600458
Target:  5'- gCGCGGGCuucggGGGCAacgggaagucUGCCCAGgGGCu- -3'
miRNA:   3'- gGCGUCCG-----UCUGU----------ACGGGUCgUCGca -5'
24398 5' -59.2 NC_005264.1 + 53255 0.67 0.689725
Target:  5'- cCCGCGGGCGcgugucuGGCuugcUGUCCcGCGGCGc -3'
miRNA:   3'- -GGCGUCCGU-------CUGu---ACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 52868 0.66 0.786188
Target:  5'- -aGCGGGCAGGCucgcgguaccUGCCaUAGCAGgGc -3'
miRNA:   3'- ggCGUCCGUCUGu---------ACGG-GUCGUCgCa -5'
24398 5' -59.2 NC_005264.1 + 49141 0.68 0.660762
Target:  5'- aCGUucaAGGUgcaAGACAUGCCCcacAGCGGCc- -3'
miRNA:   3'- gGCG---UCCG---UCUGUACGGG---UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 47932 0.69 0.58046
Target:  5'- aCGCAGGCggaGGACGgcgaGaCCCGGUccAGCGUg -3'
miRNA:   3'- gGCGUCCG---UCUGUa---C-GGGUCG--UCGCA- -5'
24398 5' -59.2 NC_005264.1 + 47278 0.68 0.680768
Target:  5'- gCUGCAGGCuGugGuguggagauUGCCaugauGGCAGCGg -3'
miRNA:   3'- -GGCGUCCGuCugU---------ACGGg----UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 46412 0.66 0.794252
Target:  5'- cCCGCGGcCAGACGccCCCAGCGaccugccGCGg -3'
miRNA:   3'- -GGCGUCcGUCUGUacGGGUCGU-------CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.