miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 93769 0.67 0.700619
Target:  5'- uUGCGGuGCGcGACGacgaugaccUGCCCGGCGGCc- -3'
miRNA:   3'- gGCGUC-CGU-CUGU---------ACGGGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 157361 0.68 0.670781
Target:  5'- -gGCGGGCccuggccGugAUGCUgGGCGGCGg -3'
miRNA:   3'- ggCGUCCGu------CugUACGGgUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 59899 0.68 0.670781
Target:  5'- aUCGCGGGCca--GUGCCCuGUGGCGc -3'
miRNA:   3'- -GGCGUCCGucugUACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 125687 0.68 0.680768
Target:  5'- -aGCuccGGCAGAgAUccugGCgCCAGCAGCGa -3'
miRNA:   3'- ggCGu--CCGUCUgUA----CG-GGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 127323 0.68 0.680768
Target:  5'- cCCGUGGGCgacggGGGCAccUGCgCC-GCGGCGUc -3'
miRNA:   3'- -GGCGUCCG-----UCUGU--ACG-GGuCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 53255 0.67 0.689725
Target:  5'- cCCGCGGGCGcgugucuGGCuugcUGUCCcGCGGCGc -3'
miRNA:   3'- -GGCGUCCGU-------CUGu---ACGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 89546 0.67 0.700619
Target:  5'- gCGCGGGCAG---UGUCCGGCgAGCu- -3'
miRNA:   3'- gGCGUCCGUCuguACGGGUCG-UCGca -5'
24398 5' -59.2 NC_005264.1 + 150896 0.67 0.700619
Target:  5'- cUCGuCAGGCaaguGGACuuucacCCCAGCGGCGa -3'
miRNA:   3'- -GGC-GUCCG----UCUGuac---GGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 59466 0.67 0.700619
Target:  5'- cCCGCGcGGCAGGCAUGacgaCUGGCA-UGUa -3'
miRNA:   3'- -GGCGU-CCGUCUGUACg---GGUCGUcGCA- -5'
24398 5' -59.2 NC_005264.1 + 66193 0.68 0.660762
Target:  5'- cCCGCAucGGCGGGCGgugcGCCUccgcGGcCAGCGa -3'
miRNA:   3'- -GGCGU--CCGUCUGUa---CGGG----UC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 49141 0.68 0.660762
Target:  5'- aCGUucaAGGUgcaAGACAUGCCCcacAGCGGCc- -3'
miRNA:   3'- gGCG---UCCG---UCUGUACGGG---UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 2639 0.68 0.660762
Target:  5'- -aGCGGGCAGGuugcGCUCuGCAGCGg -3'
miRNA:   3'- ggCGUCCGUCUgua-CGGGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 83732 0.75 0.303715
Target:  5'- aCGCGgcGGCAGAgAUGCCCucuGCGGCa- -3'
miRNA:   3'- gGCGU--CCGUCUgUACGGGu--CGUCGca -5'
24398 5' -59.2 NC_005264.1 + 57989 0.72 0.420512
Target:  5'- cCCGCGcGGCGGcCGUgGCUCAGCGGCc- -3'
miRNA:   3'- -GGCGU-CCGUCuGUA-CGGGUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 131469 0.7 0.550748
Target:  5'- gCGCGGuGCGGuCuaaagGCCCGGCAGgCGUc -3'
miRNA:   3'- gGCGUC-CGUCuGua---CGGGUCGUC-GCA- -5'
24398 5' -59.2 NC_005264.1 + 124727 0.69 0.590444
Target:  5'- gCGCGGGCA-AC--GCCUGGCGGCGg -3'
miRNA:   3'- gGCGUCCGUcUGuaCGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 61811 0.69 0.600458
Target:  5'- gCCGCGGGCaucgccGGGCAgUGCCUGGCucgccuGCGc -3'
miRNA:   3'- -GGCGUCCG------UCUGU-ACGGGUCGu-----CGCa -5'
24398 5' -59.2 NC_005264.1 + 91887 0.68 0.630605
Target:  5'- -aGCGGGguGGuugGCCgCGGCAGCGa -3'
miRNA:   3'- ggCGUCCguCUguaCGG-GUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 123352 0.68 0.630605
Target:  5'- aCCaCAGcGCAGGCcUGCCCcuGGCGGCu- -3'
miRNA:   3'- -GGcGUC-CGUCUGuACGGG--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 109707 0.68 0.650722
Target:  5'- gCCGC-GGCAGAU-UGCCCGGCcuccucGGCc- -3'
miRNA:   3'- -GGCGuCCGUCUGuACGGGUCG------UCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.