Results 61 - 80 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24398 | 5' | -59.2 | NC_005264.1 | + | 47278 | 0.68 | 0.680768 |
Target: 5'- gCUGCAGGCuGugGuguggagauUGCCaugauGGCAGCGg -3' miRNA: 3'- -GGCGUCCGuCugU---------ACGGg----UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 6660 | 0.68 | 0.680768 |
Target: 5'- -aGCuccGGCAGAgAUccugGCgCCAGCAGCGa -3' miRNA: 3'- ggCGu--CCGUCUgUA----CG-GGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 38334 | 0.68 | 0.670781 |
Target: 5'- -gGCGGGCccuggccGugAUGCUgGGCGGCGg -3' miRNA: 3'- ggCGUCCGu------CugUACGGgUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 111771 | 0.68 | 0.650722 |
Target: 5'- -aGCAGGCuAGGCG-GCCUAGaGGCGa -3' miRNA: 3'- ggCGUCCG-UCUGUaCGGGUCgUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 124772 | 0.67 | 0.739585 |
Target: 5'- aCgGCGGGUAGGCAUugugagagcggcGCCUuccacugacaAGCGGCGc -3' miRNA: 3'- -GgCGUCCGUCUGUA------------CGGG----------UCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 67630 | 0.67 | 0.739585 |
Target: 5'- aCGCGGGCgcAGGgGUGUCCuGC-GCGg -3' miRNA: 3'- gGCGUCCG--UCUgUACGGGuCGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 71628 | 0.66 | 0.795141 |
Target: 5'- gCgGC-GGCAGAgAUaGCCCAGUGcGCGa -3' miRNA: 3'- -GgCGuCCGUCUgUA-CGGGUCGU-CGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 46412 | 0.66 | 0.794252 |
Target: 5'- cCCGCGGcCAGACGccCCCAGCGaccugccGCGg -3' miRNA: 3'- -GGCGUCcGUCUGUacGGGUCGU-------CGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 117867 | 0.66 | 0.786188 |
Target: 5'- -gGCAuGGCGGACAgcuuuucccGCCCGGCAucuGUGa -3' miRNA: 3'- ggCGU-CCGUCUGUa--------CGGGUCGU---CGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 18618 | 0.66 | 0.786188 |
Target: 5'- aCCGCA-GCGGACGUGUuuGuGCAGUu- -3' miRNA: 3'- -GGCGUcCGUCUGUACGggU-CGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 39485 | 0.66 | 0.786188 |
Target: 5'- gCCGCcagGGGCAGGCcUGCgCuGUGGUGg -3' miRNA: 3'- -GGCG---UCCGUCUGuACGgGuCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 31813 | 0.66 | 0.785285 |
Target: 5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3' miRNA: 3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 40287 | 0.66 | 0.783475 |
Target: 5'- gCCGCgucgcgguucgacgAGGCGGACGgcgaggauccccUGCCCcccgccgcguGCGGCGg -3' miRNA: 3'- -GGCG--------------UCCGUCUGU------------ACGGGu---------CGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 3658 | 0.66 | 0.7771 |
Target: 5'- gCCGCcgucucgacgauGGGCGGcCGU-CUCGGCGGCGa -3' miRNA: 3'- -GGCG------------UCCGUCuGUAcGGGUCGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 97464 | 0.66 | 0.7771 |
Target: 5'- gUCGCcuGCgAGACucuaCCCGGCGGCGUc -3' miRNA: 3'- -GGCGucCG-UCUGuac-GGGUCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 4589 | 0.66 | 0.767888 |
Target: 5'- aCGCAGGCccuccccGcCAgcGCCgCGGCGGCGUa -3' miRNA: 3'- gGCGUCCGu------CuGUa-CGG-GUCGUCGCA- -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 89072 | 0.66 | 0.76417 |
Target: 5'- cUCGguGGCGGACAugauuuuuuauuugUGCCgAuuaggccGCGGCGg -3' miRNA: 3'- -GGCguCCGUCUGU--------------ACGGgU-------CGUCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 158573 | 0.66 | 0.758558 |
Target: 5'- aUGCAGGCcgaacAGACucgcUGCgCGGCGGCa- -3' miRNA: 3'- gGCGUCCG-----UCUGu---ACGgGUCGUCGca -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 142355 | 0.66 | 0.758558 |
Target: 5'- aCCGCAGGCaaaagGGAuucCAUGCCCucccauGC-GCGc -3' miRNA: 3'- -GGCGUCCG-----UCU---GUACGGGu-----CGuCGCa -5' |
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24398 | 5' | -59.2 | NC_005264.1 | + | 116916 | 0.66 | 0.758558 |
Target: 5'- uUCGCGGuaccaguugggaGCAGAU-UGCCgCGGCGGCGc -3' miRNA: 3'- -GGCGUC------------CGUCUGuACGG-GUCGUCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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