miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 42609 0.66 0.795141
Target:  5'- cCCGCAGccauggccGCGGAC--GCCCGGUccgcuGCGUa -3'
miRNA:   3'- -GGCGUC--------CGUCUGuaCGGGUCGu----CGCA- -5'
24398 5' -59.2 NC_005264.1 + 148899 0.67 0.729957
Target:  5'- gCCGCGuGGCauAGACuUGCUgCGGCAGCu- -3'
miRNA:   3'- -GGCGU-CCG--UCUGuACGG-GUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 26365 0.67 0.720248
Target:  5'- gCCGC-GGCAGGC-UGCgCGGCGcCGUc -3'
miRNA:   3'- -GGCGuCCGUCUGuACGgGUCGUcGCA- -5'
24398 5' -59.2 NC_005264.1 + 114614 1.08 0.001653
Target:  5'- gCCGCAGGCAGACAUGCCCAGCAGCGUc -3'
miRNA:   3'- -GGCGUCCGUCUGUACGGGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 18618 0.66 0.786188
Target:  5'- aCCGCA-GCGGACGUGUuuGuGCAGUu- -3'
miRNA:   3'- -GGCGUcCGUCUGUACGggU-CGUCGca -5'
24398 5' -59.2 NC_005264.1 + 39485 0.66 0.786188
Target:  5'- gCCGCcagGGGCAGGCcUGCgCuGUGGUGg -3'
miRNA:   3'- -GGCG---UCCGUCUGuACGgGuCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 40287 0.66 0.783475
Target:  5'- gCCGCgucgcgguucgacgAGGCGGACGgcgaggauccccUGCCCcccgccgcguGCGGCGg -3'
miRNA:   3'- -GGCG--------------UCCGUCUGU------------ACGGGu---------CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 3658 0.66 0.7771
Target:  5'- gCCGCcgucucgacgauGGGCGGcCGU-CUCGGCGGCGa -3'
miRNA:   3'- -GGCG------------UCCGUCuGUAcGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 89072 0.66 0.76417
Target:  5'- cUCGguGGCGGACAugauuuuuuauuugUGCCgAuuaggccGCGGCGg -3'
miRNA:   3'- -GGCguCCGUCUGU--------------ACGGgU-------CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 124772 0.67 0.739585
Target:  5'- aCgGCGGGUAGGCAUugugagagcggcGCCUuccacugacaAGCGGCGc -3'
miRNA:   3'- -GgCGUCCGUCUGUA------------CGGG----------UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 142355 0.66 0.758558
Target:  5'- aCCGCAGGCaaaagGGAuucCAUGCCCucccauGC-GCGc -3'
miRNA:   3'- -GGCGUCCG-----UCU---GUACGGGu-----CGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 4589 0.66 0.767888
Target:  5'- aCGCAGGCccuccccGcCAgcGCCgCGGCGGCGUa -3'
miRNA:   3'- gGCGUCCGu------CuGUa-CGG-GUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 71628 0.66 0.795141
Target:  5'- gCgGC-GGCAGAgAUaGCCCAGUGcGCGa -3'
miRNA:   3'- -GgCGuCCGUCUgUA-CGGGUCGU-CGCa -5'
24398 5' -59.2 NC_005264.1 + 116916 0.66 0.758558
Target:  5'- uUCGCGGuaccaguugggaGCAGAU-UGCCgCGGCGGCGc -3'
miRNA:   3'- -GGCGUC------------CGUCUGuACGG-GUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 46412 0.66 0.794252
Target:  5'- cCCGCGGcCAGACGccCCCAGCGaccugccGCGg -3'
miRNA:   3'- -GGCGUCcGUCUGUacGGGUCGU-------CGCa -5'
24398 5' -59.2 NC_005264.1 + 97464 0.66 0.7771
Target:  5'- gUCGCcuGCgAGACucuaCCCGGCGGCGUc -3'
miRNA:   3'- -GGCGucCG-UCUGuac-GGGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 67630 0.67 0.739585
Target:  5'- aCGCGGGCgcAGGgGUGUCCuGC-GCGg -3'
miRNA:   3'- gGCGUCCG--UCUgUACGGGuCGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 38846 0.67 0.720248
Target:  5'- gCGCGGGCAc-CGUGCCgAGuCGGUGa -3'
miRNA:   3'- gGCGUCCGUcuGUACGGgUC-GUCGCa -5'
24398 5' -59.2 NC_005264.1 + 117867 0.66 0.786188
Target:  5'- -gGCAuGGCGGACAgcuuuucccGCCCGGCAucuGUGa -3'
miRNA:   3'- ggCGU-CCGUCUGUa--------CGGGUCGU---CGCa -5'
24398 5' -59.2 NC_005264.1 + 31813 0.66 0.785285
Target:  5'- gCCGCAGGUcguGACGcguacucUGCCguGCcGCGc -3'
miRNA:   3'- -GGCGUCCGu--CUGU-------ACGGguCGuCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.