miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24398 5' -59.2 NC_005264.1 + 6660 0.68 0.680768
Target:  5'- -aGCuccGGCAGAgAUccugGCgCCAGCAGCGa -3'
miRNA:   3'- ggCGu--CCGUCUgUA----CG-GGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 116916 0.66 0.758558
Target:  5'- uUCGCGGuaccaguugggaGCAGAU-UGCCgCGGCGGCGc -3'
miRNA:   3'- -GGCGUC------------CGUCUGuACGG-GUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 79400 0.71 0.501419
Target:  5'- gCCGCGGGCGuGGCGagGCCgCGGCggaacccAGCGUg -3'
miRNA:   3'- -GGCGUCCGU-CUGUa-CGG-GUCG-------UCGCA- -5'
24398 5' -59.2 NC_005264.1 + 142355 0.66 0.758558
Target:  5'- aCCGCAGGCaaaagGGAuucCAUGCCCucccauGC-GCGc -3'
miRNA:   3'- -GGCGUCCG-----UCU---GUACGGGu-----CGuCGCa -5'
24398 5' -59.2 NC_005264.1 + 124772 0.67 0.739585
Target:  5'- aCgGCGGGUAGGCAUugugagagcggcGCCUuccacugacaAGCGGCGc -3'
miRNA:   3'- -GgCGUCCGUCUGUA------------CGGG----------UCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 26365 0.67 0.720248
Target:  5'- gCCGC-GGCAGGC-UGCgCGGCGcCGUc -3'
miRNA:   3'- -GGCGuCCGUCUGuACGgGUCGUcGCA- -5'
24398 5' -59.2 NC_005264.1 + 127201 0.76 0.246485
Target:  5'- gCGCAGGUAcaACGUGCCCucGCAGCGg -3'
miRNA:   3'- gGCGUCCGUc-UGUACGGGu-CGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 116404 0.74 0.347246
Target:  5'- gCCGCAGGCcGACGUcgagcGCagGGCGGCGUg -3'
miRNA:   3'- -GGCGUCCGuCUGUA-----CGggUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 146406 0.72 0.420512
Target:  5'- cCCGCGGGCAGGCc--CCgCGGCAGuCGa -3'
miRNA:   3'- -GGCGUCCGUCUGuacGG-GUCGUC-GCa -5'
24398 5' -59.2 NC_005264.1 + 114614 1.08 0.001653
Target:  5'- gCCGCAGGCAGACAUGCCCAGCAGCGUc -3'
miRNA:   3'- -GGCGUCCGUCUGUACGGGUCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 12442 0.7 0.550748
Target:  5'- gCGCGGuGCGGuCuaaagGCCCGGCAGgCGUc -3'
miRNA:   3'- gGCGUC-CGUCuGua---CGGGUCGUC-GCA- -5'
24398 5' -59.2 NC_005264.1 + 5700 0.69 0.590444
Target:  5'- gCGCGGGCA-AC--GCCUGGCGGCGg -3'
miRNA:   3'- gGCGUCCGUcUGuaCGGGUCGUCGCa -5'
24398 5' -59.2 NC_005264.1 + 4325 0.68 0.630605
Target:  5'- aCCaCAGcGCAGGCcUGCCCcuGGCGGCu- -3'
miRNA:   3'- -GGcGUC-CGUCUGuACGGG--UCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 111771 0.68 0.650722
Target:  5'- -aGCAGGCuAGGCG-GCCUAGaGGCGa -3'
miRNA:   3'- ggCGUCCG-UCUGUaCGGGUCgUCGCa -5'
24398 5' -59.2 NC_005264.1 + 139427 0.68 0.680768
Target:  5'- aCCGCuGGCGuacGCGUGCUCGGCcgucacaagagGGCGg -3'
miRNA:   3'- -GGCGuCCGUc--UGUACGGGUCG-----------UCGCa -5'
24398 5' -59.2 NC_005264.1 + 92675 0.67 0.710466
Target:  5'- cUCGCAGGUauugcgguagugAGGCGccGCCgCGGCAGCa- -3'
miRNA:   3'- -GGCGUCCG------------UCUGUa-CGG-GUCGUCGca -5'
24398 5' -59.2 NC_005264.1 + 98411 0.77 0.229497
Target:  5'- gCCGC-GGCAGACgucaucgccGUGCCC-GCGGCGUc -3'
miRNA:   3'- -GGCGuCCGUCUG---------UACGGGuCGUCGCA- -5'
24398 5' -59.2 NC_005264.1 + 70675 0.67 0.739585
Target:  5'- gCCGCcGGCAGGCAauuuuuacGCCC-GCGGgCGa -3'
miRNA:   3'- -GGCGuCCGUCUGUa-------CGGGuCGUC-GCa -5'
24398 5' -59.2 NC_005264.1 + 101315 0.66 0.749121
Target:  5'- gCC-CAGcGCGauaauCAUGCCCAGguGCGg -3'
miRNA:   3'- -GGcGUC-CGUcu---GUACGGGUCguCGCa -5'
24398 5' -59.2 NC_005264.1 + 125687 0.68 0.680768
Target:  5'- -aGCuccGGCAGAgAUccugGCgCCAGCAGCGa -3'
miRNA:   3'- ggCGu--CCGUCUgUA----CG-GGUCGUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.